Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03021 ATGACAAACTGTCACCGGAATAGCGTTGGATCCATCGCTCTCGACCACCGACACACGGAGAAAAATGCCACTGCTGGCGGCCACTTCCGCGTGCTTCGCCGCTTGATCTTCGATGCCGTCAGCTGCGGCGGCACCTCCCGCTACCGCTATCGCCAGCGTGGCGGCGGCGAAGGAAACGTTGCTGACTTCAGCTCCGTGGCTAGCCATGCAGAGAAGGAGGAGAGGTCGGAGAAGCTGTCGGATCTGCTGAACGCGGCGGAGACGAAAACGGATGCGGAGGCGGAGAGGAAGGAGGAGGCATTGGCGGAGCTGAAGCGAGTGGTGAAGGAGTTGCTCGAAGAAGACCTCTCGATGCGGAGAATCGCGGCGGAGAGAGTGAGGTCGCTGGCGAAGGAAGATGCTGAAGCGAGAGCGAATCTCGCAATGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATTCGGAAGACGCTCATTCGCAAATCGCTTCGCTCTATGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAACAAAAGGACTATAGTGAAAATCGGCACTGTACACAAGATGCTGAAACTAATTGAATCGAGTGATTCAAATTCGTCGGTGGCCGAAGCGATTGTTGCGAATTTCCTTGGATTGAGTGCTTTGGATTCGAATAAACCGATAGTTGGTTCCTCCGGTGCAATACCGTTCCTTGTTTGCACCCTAACAAATTTAGAGGCTAGTAAAACCGTATCACAATCCCAATCGCAAGTGAAGCAAGATGCTCTGCGCGCTTTGTACAATCTTTCAATATGTCAGAGCAACCTTTCGGTTATTCTGGAGACTGATTTGGTTTGGTTTTTAGTGAGCGCGATAGGGGACATGGAAGTGAGCGAGAGGAGTCTGGCGATTCTGAGCAATTTAGTGTCGACTCCGGAGGGAAGAAAAGCGATCAGTGGTGTGAGCGATGCGATTCCGACTCTGGTGGATGTGTTGAGTTGGACGGATTCGCCAGACTGCCAAGAGAAGGCGTCGTATGTGCTGATGATTATGGCACACAAAGCTTACGGGGACAGGAGGGCCATGATCGAGGCAGGGATTGTGTCGTCGCTGCTTGAGTTGACGCTTGTCGGAACCACGTTAGCTCAGAAGAGAGCCTCCAGAATATTGCAGTGTTTGAGGGTGGACAAGGGGAAACAGGTTTCAGGGAGCTACGCTGCAAACTTGAATTTGGGTGTCTCTGCTCCTATTTGTGGTGGCTCTTCTTCCTCCGAGGGTGGTGGAGGAGGAAGAGGGTCCTTGGTGGAGGAGGAAGATGGAATGATGATGAGTGAGGAAAAGAAAGCAGTGAAACAGTTGGTGCAGCAAAGTCTGCAGAATAACATGATCAAAATCGTGAAGAGGGCCAACTTGCGTCAGGATTTCGTTCCATCTGCCAAAATTGCTTCACTCACTTCGAGTTCCACTTCCAAGAGCCTCCCATTTTGA 1476 0.5196 MTNCHRNSVGSIALDHRHTEKNATAGGHFRVLRRLIFDAVSCGGTSRYRYRQRGGGEGNVADFSSVASHAEKEERSEKLSDLLNAAETKTDAEAERKEEALAELKRVVKELLEEDLSMRRIAAERVRSLAKEDAEARANLAMLGAIPPLVGMLDSEDAHSQIASLYALLNLGIGNDANKRTIVKIGTVHKMLKLIESSDSNSSVAEAIVANFLGLSALDSNKPIVGSSGAIPFLVCTLTNLEASKTVSQSQSQVKQDALRALYNLSICQSNLSVILETDLVWFLVSAIGDMEVSERSLAILSNLVSTPEGRKAISGVSDAIPTLVDVLSWTDSPDCQEKASYVLMIMAHKAYGDRRAMIEAGIVSSLLELTLVGTTLAQKRASRILQCLRVDKGKQVSGSYAANLNLGVSAPICGGSSSSEGGGGGRGSLVEEEDGMMMSEEKKAVKQLVQQSLQNNMIKIVKRANLRQDFVPSAKIASLTSSSTSKSLPF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03021 491 Gene3D - 64 247 IPR011989 -
Vimu10g03021 491 SMART arm_5 218 267 IPR000225 GO:0005515
Vimu10g03021 491 SMART arm_5 175 217 IPR000225 GO:0005515
Vimu10g03021 491 SMART arm_5 133 173 IPR000225 GO:0005515
Vimu10g03021 491 SMART arm_5 307 349 IPR000225 GO:0005515
Vimu10g03021 491 SMART arm_5 268 306 IPR000225 GO:0005515
Vimu10g03021 491 Coils Coil 69 114 - -
Vimu10g03021 491 Gene3D - 248 401 IPR011989 -
Vimu10g03021 491 SUPERFAMILY ARM repeat 103 392 IPR016024 -
Vimu10g03021 491 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03021 Vimu-Chr10 41091066 41092633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03021 95 396 U-box Gene Family AT1G67530 30.097 2.75e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03021 - - gmx:100818576 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02677 1 38692033 38694400 Vimu10g03021 10 41091066 41092633 PCT