Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03016 ATGAGTAGTTTGGTGGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATTTATAATCTTGATGAGTCAGACGACGATGCTGATTTTTTGCCAAGAAAACCCGGGACAACACAGGAAAAGTTGGAGAGAATAGTGAGAACTGATGCGAAAGAGGATTTATGTCAAGCCTGCAGTGAAAATGAGAATCTTGTGAGCTGTGAAACTTGCACTTATGCTTACCATCCTAGGTGTTTACTTCCACCCCTCAAGGGACCTCTTCCAGACAATTGGAGATGCCCGGAATGTGTTAGCCCACTTAATGATATTGACAAGATATTAGATTGTGAAATGCGACCTACTACAGCTGCTGACAATGATGCCACAAAATTAGGGGTGCCGGAGAAAGAGTTTTCGAAGGCATTTAAGACTCATCCTCGTCTAAAGACAAAAGTGAACAACTTCCATCAGAAAATGGCATCTATCAATACTTCTGATGATGACTTTGTTGCCATTCGACCTGAGTGGACTACAGTTGACCGGATACTTTCTTGCAGGTATTTTAGGGGTGATGATGATGAGAGAGAATACCTTGTGAAGTGGAAGGAACTTCCATATGATGAGTGTTATTGGGAGTTTGAATCAGATATTTCTGCATTTCAGCCAGAAATAGAAAGATTCAATAGATTGCGTTCTAGATCCAGTAAATTTTCTTCTAGTAAACATAAACAGAGTGTTAAAGATGATACTGAATTGAAGAAACAGCAGAAAGAATTTCAACATTATGAACACAGCCCTGAGTTTCTCTCAGGTGGTACACTGCACCCATATCAGCTTGAAGGCTTGAACTTCTTACGATTCTCTTGGTCCAAGCAGACTCATGTTATACTTGCTGATGAAATGGGGCTTGGGGATTTTACACCATTCTGGAAGCAATACCATGCTACAAGCCTCAATGAGTTTAGGCACATGCCTCAGCGCAAAATCAAGTTTGGAAGGTGTACACGTGAAGGAATAAAGAATAAGATAGAAGGGGGCATTGAGATGAAAATAACTTTGGAGAATAGAGGAGTGGTTTGGTTTTTTTCACCTGCAGGAAAAACCATACAAAGTATTGCTTTCCTGGCATCCCTTTTTGAAGAGAGTGTCTCCCCACATCTGGTGGTTGCTCCACTTTCAACTCTGCGAAATTGGGAACGTGAATTCGCAACATGGGCACCTCATATGAATGTGCTAATGTATGTTGGATCTGCCCAAGCTCGTAGTGTAATAAGAGAGTATGAATTTTACTTTCCAAAGAAACAAAAGAAGATCAAGAAAAAGAAATCTGGTCAGCTAATTAGTGAAAACAAGCAAGAGAGGATTAAGTTTGATGTTCTTTTGACATCGTATGAGATGATCAACTTTGACACAACATCACTAAAACCTATAAAATGGGAGTGCATGATAGTCGATGAAGGTCACCGTCTAAAAAATAAGGATTCTAAATTATTTTCCTCACTGAAGCAATATTCTAGCAGGCATCGTGTTCTCTTGACAGGAACTCCTCTTCAGCATCTTTCTCTACCCAATGCCGTGTCTCTTCCTACAGAGCTAGCTTGGCCTAGAGATGGTTCCCTTTCTAAATGTACTGATGACAGCTTTTCTGATGCCTCTCAGAACAACTTGGATGAGCTTTTTATGCTTATGCATTTCCTTGACGCTGGGAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAGGGATATCAATCAAGAGGAGCAGATTTCAAGGCTTCATAAAATGTTGGCCCCACATCTCTTGCGAAGAGTGAAGAAAGATGTCATGAAGGAATTACCTCCTAAAAAGGAACTTATTCTACGTGTTGAGTTGAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAGATATTAACTCGTCGTGGTGGTGCTCAGGCAAGATTGATGCTCTGA 1947 0.4063 MSSLVERLRVRSDRRPIYNLDESDDDADFLPRKPGTTQEKLERIVRTDAKEDLCQACSENENLVSCETCTYAYHPRCLLPPLKGPLPDNWRCPECVSPLNDIDKILDCEMRPTTAADNDATKLGVPEKEFSKAFKTHPRLKTKVNNFHQKMASINTSDDDFVAIRPEWTTVDRILSCRYFRGDDDEREYLVKWKELPYDECYWEFESDISAFQPEIERFNRLRSRSSKFSSSKHKQSVKDDTELKKQQKEFQHYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGDFTPFWKQYHATSLNEFRHMPQRKIKFGRCTREGIKNKIEGGIEMKITLENRGVVWFFSPAGKTIQSIAFLASLFEESVSPHLVVAPLSTLRNWEREFATWAPHMNVLMYVGSAQARSVIREYEFYFPKKQKKIKKKKSGQLISENKQERIKFDVLLTSYEMINFDTTSLKPIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQHLSLPNAVSLPTELAWPRDGSLSKCTDDSFSDASQNNLDELFMLMHFLDAGKFGSLEEFQEEFRDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQARLML 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03016 648 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 68 647 - -
Vimu10g03016 648 SMART ultradead3 262 534 IPR014001 -
Vimu10g03016 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 44 99 IPR013083 -
Vimu10g03016 648 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Vimu10g03016 648 ProSiteProfiles Rubredoxin-like domain profile. 61 105 IPR024934 GO:0005506
Vimu10g03016 648 CDD CD2_tandem 167 219 - -
Vimu10g03016 648 SMART chromo_7 167 224 IPR000953 -
Vimu10g03016 648 SUPERFAMILY FYVE/PHD zinc finger 47 98 IPR011011 -
Vimu10g03016 648 Gene3D - 602 647 IPR027417 -
Vimu10g03016 648 ProSitePatterns Zinc finger PHD-type signature. 54 95 IPR019786 -
Vimu10g03016 648 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 596 IPR027417 -
Vimu10g03016 648 ProSiteProfiles Chromo and chromo shadow domain profile. 169 231 IPR000953 -
Vimu10g03016 648 SUPERFAMILY Chromo domain-like 161 222 IPR016197 -
Vimu10g03016 648 Pfam SNF2-related domain 545 636 IPR000330 GO:0005524|GO:0140658
Vimu10g03016 648 SMART PHD_3 53 96 IPR001965 -
Vimu10g03016 648 Pfam SNF2-related domain 287 511 IPR000330 GO:0005524|GO:0140658
Vimu10g03016 648 Pfam Chromo (CHRromatin Organisation MOdifier) domain 170 221 IPR023780 -
Vimu10g03016 648 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 340 526 IPR014001 -
Vimu10g03016 648 Pfam PHD-finger 54 96 IPR019787 -
Vimu10g03016 648 Gene3D - 542 597 IPR038718 -
Vimu10g03016 648 Gene3D - 357 516 IPR038718 -
Vimu10g03016 648 Gene3D - 232 297 IPR038718 -
Vimu10g03016 648 Gene3D - 160 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03016 Vimu-Chr10 41048738 41055334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03016 355 632 RAD5 or RAD16-like Gene Family AT5G22750 23.549 1.93e-12 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu10g03016 SNF2_N 1.4e-31 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03016 K11643 - gmx:100790230 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02674 1 38619354 38631981 Vimu10g03016 10 41048738 41055334 PCT