Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03013 ATGACTGTGGAGAAGAGAATGAGTGATTCCGGCGAAGAGTTTCCCGTCGGAATGCGTGTGCTCGCCGTCGATGATGACCCCATCTGCCTCATGGTTTTGGAAAACCTCCTCCGGAAATGTCAATATCATGTAACTACGACAAATCAAGCAATAACAGCGTTGGCGCTTTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCATATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGACCTTCCCGTCATAATGTTGTCTGCAAACGGTGATACGAAGCTGGTGATGAAAGGGATTTCTCATGGAGCCTGTGATTATCTGCTGAAACCCGTGAGAATGGAGGAGCTCAAGAACATCTGGCAGCATGTAATCAGAAGGAAGAAGTTTGACTCAAAAGAGAAGAACAAAACAAGCAACTTAGACAAACCCACTTCTGATAGTGGCAATGGACATGGATCATCAGGAGCTGTAAATTCAGATCAAAATGAGAAGCTGACTAAGAAACGGAAGGATCAAGATGAAGATGAAGACGAGGAGCAAGAGAATGATCATGACAATGAGGACCCGTCAACCCAGAAGAAACCTCGGGTGGTTTGGTCTGTGGAACTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAACGTTGAAAAGCTTACAAGGGAGAATAAGTACAGGCTTTATCTGAAAAGAATTAGTTGCGTGGCTAACCAACAGGCTAATATGGTGGCGGCCTTAGGGGGTGCAGATCCATCCTATCTGAGAATGAGTTCTGTGAATGGGGTTGGACATTTACCAACATTGACTGGTTCTGGGCAGCTTCATAACAATGGTTTTAGATCCTTTCCACCTGGTGGAATAATTAATAGGTTGAACACTCCTGCTGGTTTGAATGTGCACGGGTTTCCTTCTGGAGTTCTTCAGTTGAGTCAGTCACAAAACTTAAACAACACTAATGATCATCTGAAGTTCCGGTCAGCCATCACTCCTGTTAATCAGAATGGTGTTCAGGGAATGCCATTGTCTGTTCAAAACAATAAGAGTCTCATTTCTGTTCAAAATTTGACCTCTGTTTTTAATGCCAAAACGAATTTTCCCATCTCAAATAAACTCCCAGATCCAAGACCAAAAGTAACATCTGTCTCTCGCACTTCAGATGTAGGTATCTCAAACAATGGCTTGATGTTGGAACCATGCCCTCAAAGCACACAGGGGAGTGTAAGGATTGAAACTTTATCTTCAGTGGCCTCTCAACATTCAGAATTTTCTTTGCCTTTGCTGGATCAAGGTAGGTATAATGATAGTTGGACAAGTGCTGTGCAGCCATCTGTGATGCAGACAAACTCTTACCCTCCAAGTGAATGTTTTAAACCGACAAACATACCTCCTCCAGATAACATGGCTACTATACCCCTGCAAGGTGGGAATCTGCCTGGTCCATCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATGACCGATATGCATTCTGAAGGATTGACTTTAACTAACAGACCTACGAATATAAGCAGTAATGTGCCATTTCAAGGGTGGGAGGACCGAAATCACGATGCTACTCATCATTCAAATAATATGTTTGCATCAATAAACTCACTGACTCCAGTCAACGGTGCTGCTGTTCCAGTGGGCCATGCAGCAGCAAACTCAGCGTCACATAGAAATTTGGACTTTAACTTTTGTGATCCCTTACAAATGAAGCATGATGATTTTGTGGAATTAACTGAAGAGATCTCATCTAGACAACATCAGGGGAATATCCTGAACCAGCAGAAGTCTCAACATAGTCATTTCTCTAGTAATCTTGGTTCATTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAGAAAGACAGGCTGAAATTATTGGATGAAAACCTCATTTGCGATAATTACCCTGAAGAGACAGACACGGGCCAGGTGGAACTCACCAGACAAATGGGTACCCACTTGAACCCTGAGTGTTGCTCACACCTTTCTAGAGTGATCAGGTAA 2088 0.4325 MTVEKRMSDSGEEFPVGMRVLAVDDDPICLMVLENLLRKCQYHVTTTNQAITALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSDSGNGHGSSGAVNSDQNEKLTKKRKDQDEDEDEEQENDHDNEDPSTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENKYRLYLKRISCVANQQANMVAALGGADPSYLRMSSVNGVGHLPTLTGSGQLHNNGFRSFPPGGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNTNDHLKFRSAITPVNQNGVQGMPLSVQNNKSLISVQNLTSVFNAKTNFPISNKLPDPRPKVTSVSRTSDVGISNNGLMLEPCPQSTQGSVRIETLSSVASQHSEFSLPLLDQGRYNDSWTSAVQPSVMQTNSYPPSECFKPTNIPPPDNMATIPLQGGNLPGPSITSLSRQSHDSMTDMHSEGLTLTNRPTNISSNVPFQGWEDRNHDATHHSNNMFASINSLTPVNGAAVPVGHAAANSASHRNLDFNFCDPLQMKHDDFVELTEEISSRQHQGNILNQQKSQHSHFSSNLGSLEDLVSSMMKQEKDRLKLLDENLICDNYPEETDTGQVELTRQMGTHLNPECCSHLSRVIR 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03013 695 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Vimu10g03013 695 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Vimu10g03013 695 MobiDBLite consensus disorder prediction 141 206 - -
Vimu10g03013 695 CDD REC_typeB_ARR-like 20 134 - -
Vimu10g03013 695 PIRSF RR_ARR_type-B 1 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu10g03013 695 SUPERFAMILY CheY-like 17 141 IPR011006 -
Vimu10g03013 695 Gene3D - 200 257 - -
Vimu10g03013 695 SUPERFAMILY Homeodomain-like 201 255 IPR009057 -
Vimu10g03013 695 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 373 IPR045279 GO:0009736
Vimu10g03013 695 MobiDBLite consensus disorder prediction 151 171 - -
Vimu10g03013 695 FunFam Two-component response regulator 200 257 - -
Vimu10g03013 695 MobiDBLite consensus disorder prediction 508 533 - -
Vimu10g03013 695 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 247 IPR006447 GO:0003677
Vimu10g03013 695 Coils Coil 172 192 - -
Vimu10g03013 695 SMART REC_2 18 130 IPR001789 GO:0000160
Vimu10g03013 695 Gene3D - 17 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03013 Vimu-Chr10 41030223 41034668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03013 1 372 Response Regulator Gene Family AT2G25180 57.071 3.58e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vimu10g03013 Response_reg 4.8e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03013 - K14491 gmx:100809002 1102.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03013 10 41030223 41034668 Vimu10g03013 10 41030223 41034668 ECH
Vimu1g02672 1 38602581 38606400 Vimu10g03013 10 41030223 41034668 PCT