Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03012 ATGGGAACACTGAGCTACCAGGCTCCCTTCTGTGATAGCCTTTCTGCTGCAGTGACTCCTTCAAGTCCAAGCACACCATTGCAGAATCCACAGGAGAAGAAACTTGAGGAAGAAGAAGAGGGAGAAAAAGAGAAAAAAGGAGATACTTTACTAGATCTAAATGTCCCCGGTGATGATTCTGCTACTGGGTGTAGTCCGGTGCTGAATCTCATCACTTGTCTGGAAACGGATTTGTCATCAGAAGACCCCCACGAGCCAAGAGTGTTCTCTTGCAACTACTGTCAGAGGAAGTTCTATAGTTCACAAGCTCTTGGTGGACACCAAAATGCTCACAAAAGAGAAAGGTCCATAGCAAAGAAAAGTCACAGATCAGCAACAGCTTTTGGAATTCCTTTTCCTCACTATCCCACTGTGGCTTCTCTGCCTCTCCATGGTGCTTGTGGTAATAAACCACTTGGAATTCAGACTCACTGCATGATTCATAGGCCTCCTCCTCTTCTTCATCCTCACTTCTCATTCAATGGTTTTTCAAACACTTTTGGACATCATCATGGGTGGTCAAGACCCCTTATTACTCAACAACCTGGGATAGGGAAGTTAACTATGGAAAATTGTCGCAAAACATCACGAGACAACGTTGGCAGATTTCAACTCAAGTCAGCAGGTAATGAAGAAATAAGTGAATATCTGGTTAGTGGAAATACTGGTCAAGAGAAAAAGAAATACCTTGACTTGTCCCTAAAGCTCTAA 750 0.4347 MGTLSYQAPFCDSLSAAVTPSSPSTPLQNPQEKKLEEEEEGEKEKKGDTLLDLNVPGDDSATGCSPVLNLITCLETDLSSEDPHEPRVFSCNYCQRKFYSSQALGGHQNAHKRERSIAKKSHRSATAFGIPFPHYPTVASLPLHGACGNKPLGIQTHCMIHRPPPLLHPHFSFNGFSNTFGHHHGWSRPLITQQPGIGKLTMENCRKTSRDNVGRFQLKSAGNEEISEYLVSGNTGQEKKKYLDLSLKL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03012 249 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Vimu10g03012 249 SUPERFAMILY beta-beta-alpha zinc fingers 86 117 IPR036236 -
Vimu10g03012 249 Gene3D Classic Zinc Finger 74 128 - -
Vimu10g03012 249 MobiDBLite consensus disorder prediction 31 51 - -
Vimu10g03012 249 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 249 IPR044246 GO:0009788
Vimu10g03012 249 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Vimu10g03012 249 MobiDBLite consensus disorder prediction 14 30 - -
Vimu10g03012 249 MobiDBLite consensus disorder prediction 14 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03012 Vimu-Chr10 41018555 41019304 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03012 36 249 C2H2 Transcription Factor Family AT5G10970 41.079 1.30e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu10g03012 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03012 - - vra:106761491 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02668 1 38571979 38574627 Vimu10g03012 10 41018555 41019304 PCT