Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03007 ATGGCTAGATCACAACAGCGATACCGAGGTGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCTGAAATTCGACACCCCATATTAAAAACTAGGATATGGCTAGGAACTTTTGAAACTGCTGAGGATGCAGCAAGAGCTTATGATGAAGCAGCAAGGCTAATGTGCGGGACAAGGGCAAGAACAAATTTCCCTTACAACCCAAATGCATCTCAGTCATCATCTTCGAAGCTTCTATCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACTACCAGAGCCTCAGAGAGTGGCTTCACCAAACGTCATCACCTCTGCAAGTAACTTCTCCATAAAGAGTAACGAAACTAAAACAATGTTGCCACAGAAGAGAGAACAGGAGGAGCAAGAAGTGGAGGAGAATTGGGTTTTGAAGAAGGTTAAGGTGGAAAGGACTCAGCAGTTCAAGCCTCTTGAAGAGGATCACATTGAACAAATGATAGAGGAGTTGCTGCATTATGGCACTATTGAGCTTTGCTCTGTGATTCCCCACCATAGGCTCTATTAA 579 0.4456 MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSLPEPQRVASPNVITSASNFSIKSNETKTMLPQKREQEEQEVEENWVLKKVKVERTQQFKPLEEDHIEQMIEELLHYGTIELCSVIPHHRLY 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03007 192 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Vimu10g03007 192 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Vimu10g03007 192 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Vimu10g03007 192 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Vimu10g03007 192 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 135 - -
Vimu10g03007 192 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Vimu10g03007 192 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Vimu10g03007 192 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Vimu10g03007 192 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Vimu10g03007 192 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03007 Vimu-Chr10 40981733 40982431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03007 1 191 AP2-EREBP Transcription Factor Family AT5G25190 65.445 3.76e-80 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g03007 AP2 6.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03007 - - gmx:100804510 312.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g03007 10 40981733 40982431 Vimu10g03007 10 40981733 40982431 ECH
Vimu1g02658 1 38432069 38433050 Vimu10g03007 10 40981733 40982431 PCT