Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03005 ATGAAAAAGAACCTTCCTTTTGTGTTTATTCTTCTTCTGCACTACGTTGCTGCTGCAGACCCTCCTGCTTCCTCTCCTCAACTTCCACCTGATTTCTCTCCAGGGGAGGAGCAGCATCACCTGCACAAGAAAATGCTAGTAGCTATTGTCGTAGCCACCATTTCACTTGCTGCACTCATTTTCGGTTTCTTATGTTTCTGGATTTATCACACCAAGTGTCCAACAAAATCCAAAACCAAAAAGGTTCAAACTCCTGGTCCAGATGCAGAGAGGGGGATCACCCTTGTACCGTTTCTGAGCAGATTCAGTTCCATCAAAATTGTTGGTATGAAGGAGTCTGTGCCGATAGTTGATTATAAGCAAATAGAAAAAACGACCAATAATTTTCAGGAAAGTAACATCTTGGGCGAGGGTGGTTTTGGATGTGTTTACAAGGCTCGGTTGGATCATAATCTGGATGTTGCAGTAAAAAAACTACACTGTGAGACTCAACATGCGGAAAGAGAATTCGAGCTGTCTGATTTTGGTCTTGCCATAACTGATGGGTCCCAAAGCAAGAAGAACATTAAACTATCGGGTACGTTAGGATATGTAGCACCGGAGTATCTTCTAGATGGTAAATTGAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTTCTATTAGGAAGGAAGCCAGTGGAAAAACTGGCACCGACGCAATGCCAGTCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGAGCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGGACACTATGGATCATAAACACTTGTACCAGGTTGCTGCTGTAGCTGTGCTATGCGTGCAACCAGAGCCTAGTTATCGCCCTCTCATCACAGATGTTCTTCACTCACTTATCCCTCTTGTTCCCATTGAGCTCGGAGGAACACTCAGAGTTTCGCAAGTGAGGCAGCATACCTCTCTTGCTGTGAATTCCCGTCATTGA 993 0.4451 MKKNLPFVFILLLHYVAAADPPASSPQLPPDFSPGEEQHHLHKKMLVAIVVATISLAALIFGFLCFWIYHTKCPTKSKTKKVQTPGPDAERGITLVPFLSRFSSIKIVGMKESVPIVDYKQIEKTTNNFQESNILGEGGFGCVYKARLDHNLDVAVKKLHCETQHAEREFELSDFGLAITDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPTQCQSIVTWAMPQLTDRAKLPNIVDPVIKDTMDHKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVRQHTSLAVNSRH 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03005 330 Gene3D Transferase(Phosphotransferase) domain 1 170 323 - -
Vimu10g03005 330 Pfam Protein kinase domain 168 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03005 330 Gene3D Phosphorylase Kinase; domain 1 109 169 - -
Vimu10g03005 330 PANTHER OS01G0750732 PROTEIN 37 171 - -
Vimu10g03005 330 SUPERFAMILY Protein kinase-like (PK-like) 114 299 IPR011009 -
Vimu10g03005 330 ProSitePatterns Protein kinases ATP-binding region signature. 135 158 IPR017441 GO:0005524
Vimu10g03005 330 FunFam probable receptor-like protein kinase At1g80640 153 306 - -
Vimu10g03005 330 ProSiteProfiles Protein kinase domain profile. 1 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03005 Vimu-Chr10 40962399 40965705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03005 167 305 Receptor kinase-like Gene Family AT3G58690 50.350 6.77e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Vimu10g03005 Pkinase 1.6e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03005 - - gmx:100784795 283.878