Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g03000 ATGTCTAACTCTGTCATCAATGGCAATGATTCTCTCACTGGTCACATCATATCTACAACTATTGGAGGCAAAAATGGGGAACCTAAACAGACTATTAGTTACATGGCAGAACGGGTTGTAGGAACTGGGTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGGGAAGCAGTGGCAATTAAAAAGGTTTTACAAGACAGGCGATACAAGAATCGTGAACTGCAGTTAATGCGTGTGATGGATCACCCAAATGTGATCACTCTGAAGCATTGTTTCTTTTCCACTACAAGTACAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGAGTCTTGAAACACTATAGCAATGCTAATCAGAGAATGCCCATCATCTATGTGAAACTTTACATGTATCAGATTTTCAGGGGGTTGGCTTATATCCACACTGTTCCCAAAGTCTGTCACAGAGATTTGAAGCCTCAAAATATACTGGTGGATCCTCTTACACACCAAGTGAAGCTGTGCGATTTTGGAAGTGCAAAAGTTCTAGTCCAAGGTGAAGCTAATATATCGTACATATGTTCACGATTCTATCGAGCACCAGAACTTATATTTGGTGCCACTGAGTATACAAGTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTTCTTTTGGGCCAGCCATTATTCCCTGGCGAAAATGCTGTAGACCAGCTCGTACATATTATAAAGGTGCTTGGCACACCCACTCGAGAGGAAGTGCGCTGTATGAATCCCAATTACAATGACTTTAGGTTTCCACAGATAAAAGCACATCCATGGCACAAGATATTCCACAAAAAGATGCCTCCAGAAGCCATTGATCTTGCATCTCGGCTATTGCAATACTCCCCAAGTCTTAGGTGCACTGCGCTTGAAGCATGTGCTCATCCTTTCTTTGATGAACTCCGAGAACCCAATGCTCGCCTGCCAAATGGTCGTCCATTTCCCCCTCTATTTAACTTCAAACAGGAATTAAGCGGAGCATCTCCTGAGCTTGTTAATAAGCTGATACCTGACCATGTGAAGAGGCAAATAGGGCTGCAATTTGTTCATCTTGGAGGATCTTGA 1125 0.4222 MSNSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVITLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPKVCHRDLKPQNILVDPLTHQVKLCDFGSAKVLVQGEANISYICSRFYRAPELIFGATEYTSSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHVKRQIGLQFVHLGGS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g03000 374 Gene3D Transferase(Phosphotransferase) domain 1 114 361 - -
Vimu10g03000 374 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Vimu10g03000 374 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Vimu10g03000 374 CDD STKc_GSK3 29 321 IPR039192 -
Vimu10g03000 374 SUPERFAMILY Protein kinase-like (PK-like) 33 343 IPR011009 -
Vimu10g03000 374 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 2 363 - -
Vimu10g03000 374 FunFam Shaggy-related protein kinase kappa 114 361 - -
Vimu10g03000 374 SMART serkin_6 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03000 374 Pfam Protein kinase domain 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03000 374 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Vimu10g03000 374 ProSiteProfiles Protein kinase domain profile. 34 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g03000 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g03000 Vimu-Chr10 40916776 40919822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g03000 38 356 MAP Kinase Gene Family AT3G59790 35.329 2.23e-58 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Vimu10g03000 Pkinase 2.9e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g03000 K14502 - gmx:100779909 759.214