Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02999 ATGGATCAAGATAGAGGTGAGGTATTGGATCCGGTTCATGACAAGAGTTTAAGTCATTTGGTTGAACGGGTTGCAATTGCTAGCGATAGTATAAGTGAAGAAGCTGGAACTTCGAGACGGGTCGATGCGAATTCAGGATCTGATAAGGAGCTAAAGGAGGAAGTTAAGGGCCAAGACAAGCATGGTCGAGAAAATTTCAGTGATAAGTTACCTGGGGTTGATCAGGGAACTAGTTGTAATTCAAACCATTTGGTTAATCAAGAAGTGATTGAAAGTGTGATTGTGATTCAGTCTATTCGGACTGAGTACACGAATGAAGATAATAGGAAATTGGAAGTAAAAGTTGAGGAATCGGGGTTGAGCTTGGGGTCCATGAAAGCAGCAAAAGAGGTGTCTGAAACTGATAAAAGTTCATGTGTGATTGATATAAAGTGCAGCAGCCACAAAAAGTTATATGACAATTCTGAAGGTGAAACAATTTGTAGGATTTGCCATCTGACTTCTGGTCAATCACCAGATGTAACAATTGTTGGCACTGCTAATAGTGCTACAAGAGTAGATTTGATTCAGCTTGGTTGTGCATGTAAAGATGAACTAGGCATCGCGCACGTTCACTGTGCTGAGGCGTGGTTCAAGCTCAAGGGGAACAGGTTATGTGAAATATGCGGAGAGCCTGCAAAAAATGTTTCAGGTGTTAGCAGAAATGGGTTTATAGAAGAGTGGAATGAAAGAAGATTCATGGACAACGATGGTAATTCATCCCCAAGAGTTGTTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCATGCCTGGTGATAGCTTTTGTTCTGCCGTGGTTTTTTCATGGAAAGTTGGTTAGGGTCGAGCACTCCAGCAATTACGACATGACAGTTGCATTGCATCCACTCCTCACTTTACTTTGGTCAAAATTTGAGGCTGGAGGCGATGTCGTAGAGAAAGAATAA 975 0.4215 MDQDRGEVLDPVHDKSLSHLVERVAIASDSISEEAGTSRRVDANSGSDKELKEEVKGQDKHGRENFSDKLPGVDQGTSCNSNHLVNQEVIESVIVIQSIRTEYTNEDNRKLEVKVEESGLSLGSMKAAKEVSETDKSSCVIDIKCSSHKKLYDNSEGETICRICHLTSGQSPDVTIVGTANSATRVDLIQLGCACKDELGIAHVHCAEAWFKLKGNRLCEICGEPAKNVSGVSRNGFIEEWNERRFMDNDGNSSPRVVGCWRGQPFCNFLMACLVIAFVLPWFFHGKLVRVEHSSNYDMTVALHPLLTLLWSKFEAGGDVVEKE 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02999 324 MobiDBLite consensus disorder prediction 43 68 - -
Vimu10g02999 324 SUPERFAMILY RING/U-box 156 225 - -
Vimu10g02999 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 234 IPR013083 -
Vimu10g02999 324 SMART ringv_2 160 223 IPR011016 GO:0008270
Vimu10g02999 324 ProSiteProfiles Zinc finger RING-CH-type profile. 153 229 IPR011016 GO:0008270
Vimu10g02999 324 PANTHER ZINC FINGER, RING-CH-TYPE 51 289 - -
Vimu10g02999 324 MobiDBLite consensus disorder prediction 31 74 - -
Vimu10g02999 324 Pfam RING-variant domain 161 222 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02999 Vimu-Chr10 40907861 40910714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02999 141 285 C3H Transcription Factor Family AT5G05830 42.000 2.76e-30 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02999 - - gmx:100776373 437.573