Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02987 ATGGGAAAGCCCTCAGGGAAGAAGAAGGGTATCGCTACTCCGGCTACTGCAAATTCACATGCCAAACCTGCCAAGTCCTCCAAGGCTTTCGATGAAGATACAGCAATGTTCATTAACATGTCACAAGAGTTCAGAGAAGAAGGTAACAAGTTGTTTCAGAAGAAGGATCACGAAGGCGCCATGCTCATGTACGAGAAGGCACTGAAGCTGCTTCCCAAGAACCACATAGATGTGGCACACCTTCATACCAACATGGCCACGTGTTACATGCAATTGGGTCTCGGGGAATACCCTCGAGCCATTCACGAATGCAATTTGGCGCTGGAAGTGTCTCCAAGGTACAGCAAAGCTCTTCTGAAAAGAGCCACGTGCTATCGTGAGCTTAATCGCTTGGATTTGGCGCTAAGGGATGTTAATCTTGTTTTGAGCATGGAGCCGAATAACCTCACCGCGTTGGAGCTTCTCGAGAGTCTCACGAAGTCAACGGAAGAAAAGGGGGTCTCTGTTGATGATAAAAAGGTGGCTTTTGATACCACCATTTATCACTCTCCTCCTTCTTCGCAAAAACTGAAGAAGAAGAGAGGTAAAAAAATTGAGGACAAGGTGGTTGTGGAGGAAAAGTTGGGTGTCATTGTTGAGGATAAAAGGGTGGTTTCCAAACCAATTGGGCAAGAAGGCAAGGTGGTTTCGAAAACAATAGGGCAAGAAGGCAAGGTGGTTTCAAAAACAATTGGGCAAGTAAAAGAATTGGATTCAAAAACAATTGAGCAAGTAAAAGAGTTGGATTCAAAAACAATTGAGCAAGAAAAAAAGGTGGTGGAAATCAAACCTGTGGAGGAAGAAAAAACTGTCACGATCACAAGGAGCGTGAAGTTGGTGTTTGGAGAAGATATAAGGTGGGCTCAGTTACCCGTGAATTGTAGCGCGAAGTTGGTGAGGGATATAGCTAGGAACCGGTTTCCAGGTTTGAAGGGAGTTCTTGTCAAGTATAAGGATAAAGAAGGTGATTTGGTTACTATCACTACTACAGATGAACTAAGGTTAGCTGAAAAGTCTGCTCCTGAGAAGGCATCGTTTAGGCTTTATATTTCTGAGGTCAGTCCAGATCAAGAACCTTCTTATGATGGAACAACAACCAATGGGAATGAGGTGCAAAGGGACGGTGGAAATCAAAATGATGGTGTTGACAATAGGGGTACGGAAGAAGGCAGAGATGAATATGCTGCAAAAAGGATGATTACTGTGGAGGACTGGCTTCTCCAGTTTGCAAGGCTGTTCAAGAACCATGTAGGGTTTGAGTCTGATTCTTATCTAGATACTCATGAGTTTGCAATGAAGCTGTACGGAGAAGCGATGGAAGATACGGTAGCAAGCAATGATGCTCAAGAACTTTTTGGAATTGCTGCTGATAAATTTCAAGAGATGGCTGCCTTGGCACTGTTTAATTGGGGAAGTGTTCAGATGTCCAGGGCAAGGAACCAAGGTTTCTTTTCGGAGGATGGGGCTAGAGAATCTTCCTTGGAGCATATAAAAGCTGCATATGAGTTGGCACGAAAGGAGTACGAGAAAGCAGAATTGAGATATGAAGAAGCCTTGAAAATCAAACCTGACTTCTACGAAGGATATCTTGCTCTTGGGCATCAGCAGTTTGAGCAAGCAAGGCTGTGCTGGTGTTATGCATTGGCATGCAAGGACTCAAATGCTGGCTTTTCTGAGGAGGTTCTACAACTTTATAACAAGGCAGAGGATAGCATGGAGAAAGGCATCTTGATGTGGGAGGAGGTTGAGGAGCAGCGTTTGAATGGAATATCCAAATCAGATAAATATAAAGAACAGTTAGAGAAAATGGGCTTGGATGGTCTTTTCAAAGATGTTTCTGATGATGAAGCTTCAAAGCAAGCTGCAAAGATGAGATCTCAGATACACCTTCTATGGGGAACCTTGTTGTATGAACGTTCTGTTGTGGAATATAAGCTTGGCCTTCCCACATGGGAGGAATGTTTGGAGGTTGCTGTAGAAAAATTTGAACTAGCTGGAACTTCTGGAACAGATATTGCTTTCATTGTAAAGAATCACTGCTCAAATGAAACAGCGCTTGAAGGGTTCAAAATTGATGAGATAGTACAGGCATGGAATGAGATGTACGATGCTCAGGGGTGGCAGTTTGGTGATCCATCATTTCGACTTGAACCATTGTTTCGTCGGCGTGTTCCTAAACTCCATTCCATATTGGAGCAGTTTTAA 2244 0.4358 MGKPSGKKKGIATPATANSHAKPAKSSKAFDEDTAMFINMSQEFREEGNKLFQKKDHEGAMLMYEKALKLLPKNHIDVAHLHTNMATCYMQLGLGEYPRAIHECNLALEVSPRYSKALLKRATCYRELNRLDLALRDVNLVLSMEPNNLTALELLESLTKSTEEKGVSVDDKKVAFDTTIYHSPPSSQKLKKKRGKKIEDKVVVEEKLGVIVEDKRVVSKPIGQEGKVVSKTIGQEGKVVSKTIGQVKELDSKTIEQVKELDSKTIEQEKKVVEIKPVEEEKTVTITRSVKLVFGEDIRWAQLPVNCSAKLVRDIARNRFPGLKGVLVKYKDKEGDLVTITTTDELRLAEKSAPEKASFRLYISEVSPDQEPSYDGTTTNGNEVQRDGGNQNDGVDNRGTEEGRDEYAAKRMITVEDWLLQFARLFKNHVGFESDSYLDTHEFAMKLYGEAMEDTVASNDAQELFGIAADKFQEMAALALFNWGSVQMSRARNQGFFSEDGARESSLEHIKAAYELARKEYEKAELRYEEALKIKPDFYEGYLALGHQQFEQARLCWCYALACKDSNAGFSEEVLQLYNKAEDSMEKGILMWEEVEEQRLNGISKSDKYKEQLEKMGLDGLFKDVSDDEASKQAAKMRSQIHLLWGTLLYERSVVEYKLGLPTWEECLEVAVEKFELAGTSGTDIAFIVKNHCSNETALEGFKIDEIVQAWNEMYDAQGWQFGDPSFRLEPLFRRRVPKLHSILEQF 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02987 747 PANTHER PROTEIN CLMP1 1 745 IPR044517 -
Vimu10g02987 747 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Vimu10g02987 747 Gene3D - 273 366 - -
Vimu10g02987 747 SUPERFAMILY CAD & PB1 domains 286 375 - -
Vimu10g02987 747 ProSiteProfiles PB1 domain profile. 287 366 IPR000270 GO:0005515
Vimu10g02987 747 SUPERFAMILY TPR-like 41 561 IPR011990 GO:0005515
Vimu10g02987 747 SMART tpr_5 505 538 IPR019734 GO:0005515
Vimu10g02987 747 SMART tpr_5 41 74 IPR019734 GO:0005515
Vimu10g02987 747 SMART tpr_5 115 148 IPR019734 GO:0005515
Vimu10g02987 747 SMART tpr_5 79 114 IPR019734 GO:0005515
Vimu10g02987 747 Pfam PB1 domain 287 364 IPR000270 GO:0005515
Vimu10g02987 747 Gene3D Tetratricopeptide repeat domain 33 178 IPR011990 GO:0005515
Vimu10g02987 747 CDD PB1 290 363 - -
Vimu10g02987 747 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Vimu10g02987 747 SMART PB1_new 287 366 IPR000270 GO:0005515
Vimu10g02987 747 MobiDBLite consensus disorder prediction 368 403 - -
Vimu10g02987 747 MobiDBLite consensus disorder prediction 1 28 - -
Vimu10g02987 747 Coils Coil 507 534 - -
Vimu10g02987 747 MobiDBLite consensus disorder prediction 370 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02987 Vimu-Chr10 40798577 40802289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02987 25 148 Calmodulin-binding Proteins AT3G25230 31.579 1.03e-09 59.7