Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02972 ATGGCGCAAGATATTGGTACTCCACCAGTTCCTTTTGATTTTGAACTCTTGGTTGGTGATCCTGAGAACCTTAGAACTGTCAAAGCCTCATCCAGCAGCACAGACCCATGGATTGAACCTGAAAGGTTAAAACTTAGACACAGGATTGGGCGGGGACCCTTTGGCGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTATGATGAGTATCATGAAGTTGCTGCAAAGATGCTACCCCCTATCAGAGAGGAACATATGAAGACTGCATTAGAGAAATTTTTTGAGTTATATTTTCAGTGCCAAGGAGCGGCTAGGGTGTTTTGGCTACTTGGGATTTCAATTTTGAATGGAAGGATATGCATGATTATGAATTTTTATGAGGGATCGGTTGGTGATAAGATGGCTAGACTCAGAGAGGGAAGGATTTCATTGCCTGATGTTCTTAGAATATTGGTCAATGCTAAGAGTGCGGTATTGGGCTTCAGGTATGGTATCGATCTGGCTCAAGGTATTCTTGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATCCAACGTGCTTCTCGATGACACTGATCAAGCAATACTGGGAGATGTTGGTATTCCAAATATTCTCTTTGGTTCCTCATTCCTAAGCTCAGACACTGCCAATAGGCTTGGTACTCCAAATTACATGGCTCCAGAACAATGGGAACCAGAAGTCAGAGGCCCTGTATCCTTTGAAACAGATTCATGGGGGTTTGGGTGCACTATTGTGGAAATGTTGATTGGTAACCAACCTTGGTATGGGTGTCCTGTTGGTGAAGTATATCGATCAGTTGTTGAAAAGTATGAAAAACCCCAGATTCCTGGTGGCCTTCCTTCTTCAGTTGAAAATGTCCTCAGTGGCTGCTTTGAATATGACTTGAGGAATCGCCCTTCAATGGTAGATATTCTGTCTGTCTTTAGAAGTTGGGATTTTAACCTGCATTTGACATCAAAAACTGCATTTTCTAGGATGATATCAAAACTGGTATTTGACATGCTCCGGGTCAGTTGGCCTAGGAATGAGTGGGAGTGTTGCGCACGGAATGCAGTGGTCAATGATGGAGGATGGAGATATCTTGGAATTCACAAAACATTGGCAAAATCAAGTAGCACGGGCTACACACAGTGGTCCCTCTCAAAGGATCATCTTGAGGTGGGCGATACCGTGCGCTCTAGAAAGCCTTCCAATTCATGCAATCCACAGAACATGGAGGTCCCAGAAGGAAATGTTGTCGGCAATGCAGATCATGGATTTGTTTTAGTGAGGCTCCATGGAGTTCATGACCCTGTAAGGATTCATGCGTCAACTCTTGAACGTGTCACCAATGGTTTAGGAGCCGGGGATTGGGTGCGCATTAAGGAAGAAGATGATAAACACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGAGGGCAGAGTGAGTGTTGGATTTATAGGCCTACGAACTCTTTGGAAAGGAAACTGTTCAGAACTTGAAATGGCAGAGTCTTACTGTGTGGGGCAATTTATTAGGCTGAAACCCAATGTTCTAAGTCCCCGGTTTGAATGGTTGCGTAGAAGGGGAGGAGGTACCTGGGCTACTGGTAAGATTTCTTGGATCCTACCAAATGGATGTCTGGTTGTCAACTTCCCAGGCATGTTGAACATCTGGAATGCACCAAACACTTATTTGGCTGATCCCTCTGAGGTTAATGTGGTTAGTTTTAAGAATTGTCCAAATATGATAGAAAAGTATCAACATGTTGAGGATCACCACTGGGCAATTAGACCTGTTCTAATTGCATTTGGCCTTCTTAGCACTGTTAAAGTAGGGATGACAATTGGAAAAAAAATTGGCAGGAACATGAATGTGAATGCAATGGAGAATGAAAGTCAGTATACTGATAGCCAGAATGCTAGCAGCCCTACATCTACATGGAAATCTTCAGTAGCTAACATCCTTTTCAGAGAAGGTAGTTAA 2004 0.4321 MAQDIGTPPVPFDFELLVGDPENLRTVKASSSSTDPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFFELYFQCQGAARVFWLLGISILNGRICMIMNFYEGSVGDKMARLREGRISLPDVLRILVNAKSAVLGFRYGIDLAQGILELHSKGILVLNLKPSNVLLDDTDQAILGDVGIPNILFGSSFLSSDTANRLGTPNYMAPEQWEPEVRGPVSFETDSWGFGCTIVEMLIGNQPWYGCPVGEVYRSVVEKYEKPQIPGGLPSSVENVLSGCFEYDLRNRPSMVDILSVFRSWDFNLHLTSKTAFSRMISKLVFDMLRVSWPRNEWECCARNAVVNDGGWRYLGIHKTLAKSSSTGYTQWSLSKDHLEVGDTVRSRKPSNSCNPQNMEVPEGNVVGNADHGFVLVRLHGVHDPVRIHASTLERVTNGLGAGDWVRIKEEDDKHSPVGILHSINREGRVSVGFIGLRTLWKGNCSELEMAESYCVGQFIRLKPNVLSPRFEWLRRRGGGTWATGKISWILPNGCLVVNFPGMLNIWNAPNTYLADPSEVNVVSFKNCPNMIEKYQHVEDHHWAIRPVLIAFGLLSTVKVGMTIGKKIGRNMNVNAMENESQYTDSQNASSPTSTWKSSVANILFREGS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02972 667 Pfam Protein tyrosine and serine/threonine kinase 43 318 IPR001245 GO:0004672|GO:0006468
Vimu10g02972 667 Gene3D Transferase(Phosphotransferase) domain 1 137 342 - -
Vimu10g02972 667 SUPERFAMILY Protein kinase-like (PK-like) 40 334 IPR011009 -
Vimu10g02972 667 Gene3D Phosphorylase Kinase; domain 1 20 128 - -
Vimu10g02972 667 ProSiteProfiles Protein kinase domain profile. 43 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02972 667 PANTHER OS06G0639500 PROTEIN 7 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02972 Vimu-Chr10 40665958 40669880 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02972 27 322 MAP Kinase Kinase Kinase AT2G17700 23.667 2.30e-17 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vimu10g02972 PK_Tyr_Ser-Thr 5.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02972 - - gmx:100780636 1083.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02972 10 40665958 40669880 Vimu10g02972 10 40665958 40669880 ECH
Vimu10g02972 10 40665958 40669880 Vimu1g02615 1 37773406 37777176 ECH
Vimu1g02615 1 37773406 37777176 Vimu10g02972 10 40665958 40669880 PCT