Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02967 ATGGAACTTCAGTTAGGTCTTGCTCTCCCCACTCACAACTCCACCGAGGAATTCAAGCTCAGCAAGTCCAAACAAATAGTGAGTTCAGAGTTATGGAGACCCAGTTGCGGTTCTGAAAGTGGAAAGCACGTCAAAAACAAGCGCAACTTTGAAGAGTCCTTTGAACGTTTTCTGAAACCTTTCCCTTTACTAGTATGGAGTGGGCAGCCAAATGAAGAAGATGACCGTAGTCAAAAAGTGAGAAGAAACATTCACACACCCAACAAGAACCGTAGTGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAGTCATGGAGGAGGAAAGAACTTCATCAGCATCACCCTGCAAGAGGCCAAATTAGGAACGATAGGATTCAAGCTAATGGGAATCAAAGTAGAGGACCAAACTCTTTATATGTGAATGTTAACATGGAAGGGGTAACCATAGGAAGGAAAATCAATTTGAGGCTTTTCAACTCGTATAAAACACTTACAAACGCCTTGATCAACATGTTTGCTAAATACCAAAAATTGGAGGAGGCTGGAGAAAGTTACACACTCACCTTTCGAAACGAGCAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCATTTATTGATACAGTGCGGCGTTTGGTGCTACTGAAGAATGGAAGTGCAACTATTTGA 678 0.4292 MELQLGLALPTHNSTEEFKLSKSKQIVSSELWRPSCGSESGKHVKNKRNFEESFERFLKPFPLLVWSGQPNEEDDRSQKVRRNIHTPNKNRSEENHLVGWPPVKSWRRKELHQHHPARGQIRNDRIQANGNQSRGPNSLYVNVNMEGVTIGRKINLRLFNSYKTLTNALINMFAKYQKLEEAGESYTLTFRNEQGDWLQVGHVPWQSFIDTVRRLVLLKNGSATI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02967 225 ProSiteProfiles PB1 domain profile. 138 225 IPR000270 GO:0005515
Vimu10g02967 225 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 220 IPR003311 GO:0005634|GO:0006355
Vimu10g02967 225 MobiDBLite consensus disorder prediction 124 138 - -
Vimu10g02967 225 SUPERFAMILY CAD & PB1 domains 133 215 - -
Vimu10g02967 225 Coils Coil 162 182 - -
Vimu10g02967 225 Gene3D - 134 225 - -
Vimu10g02967 225 MobiDBLite consensus disorder prediction 68 138 - -
Vimu10g02967 225 MobiDBLite consensus disorder prediction 72 92 - -
Vimu10g02967 225 Pfam AUX/IAA family 2 223 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02967 Vimu-Chr10 40641720 40643640 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02967 143 217 B3 DNA Binding Superfamily AT3G61830 29.333 3.38e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vimu10g02967 AUX_IAA 1.2e-35 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02967 K14484 - gmx:100783359 389.037