Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02963 ATGAATTGGATTGATAGAAATGGCCAATTCCTCGTATCAAACGATGGACAATTTTCCTTTGGCTTTGTCACCACAGCGAATGACACCACCTTGTTTCTACTCTCAATCATCCACGTGAGAGCTTCCCGGGTCGTTTGGAGTGCTAATACAGCAGTTCCTGTTGCTAATTCCGACAACTTTGTGTTTGATGACAAGGGCAACGTCTTCTTGCAGAAAGATGGAACCGTGGTCTGGTCCACGAACACAAGCGGCAAAGGGGTTTCTTCAATGGAATTGCGTGACACTGGGAATTTGGTTTTGCTTGGGAGTGATAATAGTACAGTGATTTGGCAAAGTTTCGGCCATCCAACAGATACTTTGCTGCCAACTCAGGAATTCACAGAGGGAATGAAACTCGTCAGTAATCCTAGCACGAACCACTTGACCCATATTCTTGAGATCAAGTCTGGTATTGTTGTTCTCTCCGCAAGTTTTCAAACTCCGCAGCCTTATTGGACTATGCAGACGGACAGCCGCAGAACCATCAACCAGGACGGCGATGAAGTGGCTTTAGCAAGCATTAGTGGAAACTCGTGGAAGTTCTATGACAAGGGAAAATCGCTGTTGTCGCAGTTCATTTTCTCTTCAGGTCAAGACTCAAATTCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACCTTCTCCACCCTCGGCAGTGGAGGGTCAAATGCTGCTTCTGAAACAATTCCCGAAGATTCTTGCGGTACTCCAGAACCTTGTGATGCATATTCCATATGCACGGGTAGCAAGAGGTGTAGCTGCCCTTCTGTTATTCCCAGTTGCAAACCTGGTTTTGACTCTCCTTGTGGTGGTGACTCAGGAAAATCCATTCAGTTGGTTAAAGCTGATGATGGACTCGATTACTTTGCGCTTCGTTTCCTTCAACCGTTTTCCAAAACCGATCTGGCTGGTTGCCAAACATCTTGCCGTGGAAACTGTTCTTGCCTTGCTATGTTCTTCCAGAGAAGTTCGGGGAATTGTTTCTTGTTGGACAGTGTAGGAAGCTTTCAGAAACCAGCTTCTGATCCTGGTTATGTTTCTTATATCAAGGTCTCCAGCGGTGGAAGTGGCAATAAGCACACCGTAGTTGTTGTGATAATTGTCTTAGTAAGCTTTTTTGTCATTTGTGGTCTTGTCTTTTGGGGAGTTAGATACCAAAGAAGAAAGCAAAGGGTGCCCGAGTCTCCTTCAGATGGCTCAGAAGAGGCCAATTTCCTGGAAAATTTAACCGGTATGCCAATCCGTTACAGCTACAAGGACCTTGAAACTGCCACCAATAACTTTTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTATAAGGGAGTTCTAGCAGATGGAACTCAAATAGCAGTGAAGAAATTGGAAAGTATTGGACAAGGAAAGAAAGAATTCAGGGCCGAAGTTAGCATCATTGGCAGCATTCATCACCTCCATTTGGTTAGGCTAAAGGGATTCTGTGCTGATGGATCGCACAGGCTGCTTGCTTACGAGTACATGCCCAATGGCTCGTTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCTGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTATCTGCACGAAGATTGTGACTCGAAGATTGTTCATTGTGACATCAAACCAGAAAACGTTCTTCTGGACGAACACTTCATGGCAAAGGTTTCGGATTTTGGGCTGGCGAAGCTCATGAATCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACGAGGGGCTATCTTGCGCCGGAGTGGATAACAAACTACGCTATATCAGAGAAAAGTGATGTTTACAGCTACGGGATGGTGCTGTTGGAGATAATCGGGGGAAGGAAAAACTACGATCCTGGTGAGTCTTCTGAGAAATCCCATTTCCCAACTTTTGCCTTTAAAATGATGGAAGAAGGGAAGGTGAGGGATATATTTGACTCGGAGTTGAGAATCGACGAGAATGATGAGAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGAGTAGAGTTGTTCAAATGTTGGAGGGTCTTTGCACTGTTCCTAATCCACCAACCACTTCTTTCTTGGGTTACTGTAACAGTGATGCTTACCTCTCTGCTGTTCGTCTTTCAGGGCCTAGATAA 2235 0.4497 MNWIDRNGQFLVSNDGQFSFGFVTTANDTTLFLLSIIHVRASRVVWSANTAVPVANSDNFVFDDKGNVFLQKDGTVVWSTNTSGKGVSSMELRDTGNLVLLGSDNSTVIWQSFGHPTDTLLPTQEFTEGMKLVSNPSTNHLTHILEIKSGIVVLSASFQTPQPYWTMQTDSRRTINQDGDEVALASISGNSWKFYDKGKSLLSQFIFSSGQDSNSTWIAVLGSDGFITFSTLGSGGSNAASETIPEDSCGTPEPCDAYSICTGSKRCSCPSVIPSCKPGFDSPCGGDSGKSIQLVKADDGLDYFALRFLQPFSKTDLAGCQTSCRGNCSCLAMFFQRSSGNCFLLDSVGSFQKPASDPGYVSYIKVSSGGSGNKHTVVVVIIVLVSFFVICGLVFWGVRYQRRKQRVPESPSDGSEEANFLENLTGMPIRYSYKDLETATNNFSVKLGQGGFGSVYKGVLADGTQIAVKKLESIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGSHRLLAYEYMPNGSLDKWIFKKNKGEFLLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDEHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPGESSEKSHFPTFAFKMMEEGKVRDIFDSELRIDENDERFQCAIKVALWCIQEDMSMRPSMSRVVQMLEGLCTVPNPPTTSFLGYCNSDAYLSAVRLSGPR 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02963 744 CDD PAN_AP_plant 312 367 - -
Vimu10g02963 744 Gene3D - 6 150 - -
Vimu10g02963 744 SMART serkin_6 441 711 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02963 744 ProSitePatterns Protein kinases ATP-binding region signature. 447 470 IPR017441 GO:0005524
Vimu10g02963 744 SUPERFAMILY alpha-D-mannose-specific plant lectins 42 169 IPR036426 -
Vimu10g02963 744 Gene3D Transferase(Phosphotransferase) domain 1 516 719 - -
Vimu10g02963 744 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 722 - -
Vimu10g02963 744 Gene3D Phosphorylase Kinase; domain 1 409 515 - -
Vimu10g02963 744 ProSitePatterns Serine/Threonine protein kinases active-site signature. 562 574 IPR008271 GO:0004672|GO:0006468
Vimu10g02963 744 CDD B_lectin 4 116 IPR001480 -
Vimu10g02963 744 FunFam S-receptor-like kinase 5 516 720 - -
Vimu10g02963 744 Pfam D-mannose binding lectin 44 127 IPR001480 -
Vimu10g02963 744 ProSiteProfiles Protein kinase domain profile. 441 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02963 744 SMART blect_4 2 116 IPR001480 -
Vimu10g02963 744 CDD STKc_IRAK 447 714 - -
Vimu10g02963 744 FunFam serine/threonine-protein kinase PBS1-like 410 515 - -
Vimu10g02963 744 Pfam Protein kinase domain 445 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02963 744 ProSiteProfiles Bulb-type lectin domain profile. 1 113 IPR001480 -
Vimu10g02963 744 SUPERFAMILY Protein kinase-like (PK-like) 422 712 IPR011009 -
Vimu10g02963 744 FunFam Serine/threonine-protein kinase 1 114 - -
Vimu10g02963 744 PIRSF SRK 2 739 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02963 Vimu-Chr10 40601541 40603871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02963 389 721 Receptor kinase-like Gene Family AT5G20050 47.159 2.09e-97 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vimu10g02963 Pkinase 9.5e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02963 - - gmx:100782258 1296.57