Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02958 ATGCCTGAGCTGCTACACGGGATTCTTAAGGTAACCATAGATGAAGTTGATAGACTGCATACTGGATGTCATTTGGATTTCTGTCAGAAGGGCACAACACACAAGGGTAAGAGATTTCTAGCCCAAGTCAAGGGTTGTCTGCTGTGCAGGCCTGAGAATCTTGTTCTGTTTAACGGAAACATGAGGAAGATTGTTGGAACAAGATTGTATGCAACAGTTGATTTAGACAAGGCAAGGGTTGGACGAACGAGAATGATAGGAAACCGACCCTCAAACCCAAAGTGGAACGAGGACTTCGAAATCTACTGTGCACATCGTATCTCAAACATCATATTCACTGTCAAAGATGGTAATCCAATCGGAGCAACTCTAATCGGAAGAGCCTATGTCCCTGTGGAGCAAGTTCGTAAGCACCCCATAGTTAAGAGATGGGTTCAGATATTAGACGAAGAAGATCATCGTCCCGTGCCGGGTCATTCCAGAATCTGCGTCAGCGTGAAATTCACCAGCGTCACTCAGGACCCAACATGGTCTCAGGGAATTCGCATGCCATTTTCTGGAGCTCCTCGTACATTCTTCAATCAGAGAGAAGGTTGTCATGTTACTTTGTACCAGGATGCTCATGCCCCACGTGGCGTTGGTGTTGTCCCATATATTCCTATATCCGAAGGAAAAGACTACTTGCCCGCAAGATGTTGGGAGGACATTTACACTGCCATTATGGATGCTAAGCATCTTGTTTACATAACTGGTTGGTCTGTTTACACTGAAATAGCATTGGTTAGAGACAAAGAGGAATCAAATATCACCCTCGGGGAGTTACTTAAGAAGAAGGCTGATGAAGGTGTTAGAGTTCTTCTGCTTATTTGGAAAGACATAACTTCTGTACCAGAATTAGCCAAAGATGGTTTGATGGCAACTCATGATGAGGAAACTGCTGCTTATTTTAGAAACACAAAGGTGCATTGTGTTCTGTGTCCACGGAACCCGGATGACGGGAAAAGCATTATTCAAGGATTTCAAACATCAACTATGTTCACTCATCACCAAAAGAGTGTGGTCGTTGATGCAGGTTTTGTAGGGTCATCACAGAAGCGAAGTGTGGTGAGTTTCATAGGTGGCCTTGATTTATGTGACGGGAGGTATGACACCAGGGATCATCCTCTATTTTCAACTCTGAATACGGTGCATAGAAACGATTTCCATCAACCAAACTTTCCAAATGCTTCCATTGATAAAGGTGGTCCAAGAGAGCCATGGCACGACATTCATTGCAAGCTAGAAGGCCCTATTGCTTGGGATGTTCTGTACAACTTTGAGCAAAGGTGGGAGAAGCAAGTTGGGAAGGAACTGCTATTCTCGCTTGATGATCTTGATTACATTCTAGTCCACCCATCTGTCGCACAAAAATCAGAAGTGGGAGAAGAAGACACATGGAATGTTCAGCTGTTTAGATCCATAGATGGTGGTGCTGCTTTGGGCTTTCCCCAAGTCCCGAATGAAGTTGCTGAATTAGGCCTTGTTAGTGGGAAAGACAATATGATTGAGAGAAGTATTCAGGATGCCTACATTAATGCTATTAGGCGTGCAAAAAACTTCGTTTACATTGAGAACCAATACTTCTTAGGGAGTTCTTATGCTTGGCAAGCAACTAATGACTTTGTGATTGAGAACATTGGTGCATTGCATCTTATACCAAAGGAGTTGACATTGAAGATTGTGAGCAAGATTGAAGCAAAAGAGAGGTTTTCTGTGTACATAGTGATCCCAATGTGGCCTGAAGGTGTACCTGAAACTGAGTCGGTTCAAGCAATATTAGATTGGCAGAGAAGAACCATGGAGATGATGTACTCCGACATTGCTGGTGCCTTGGCAAAATTCGGCATTCAAGCACACCCTCGAGATTATTTGACATTTTTTTGTCTTGGCAACAGGGAGCATAAGGAACCGGGAGAGTATACTCCTCCACAGGAACCAGAGGCTGAGAGTGACTACAGAAGAGCACAAAATTCTAGGAGGTTCATGATCTATGTTCATTCCAAAATGATGATAGTGTGTGTATTGGTTCCCTCAGTTGATGACGAATACATAATCGTTGGGTCTGCTAACATAAATCAAAGATCAATGGAGGGTTCAAGAGACAGTGAGATTGCAATGGGTGCATTCCAACCACGTCATCTAGCATGGAATGGAAGAGCCAGAGGGGAGATATATAGATTCAGACGTGCACTATGGTATGAGCACCTTGGGGACCATGGTTTTGACTCAAAAATCTTCGACAACCCAGAACATTTGGACTGCATAGGTCTTGTGAATAGGCTTGCCGAGGAAAACTGGGACATGTACTCAAAGGAAACATTTGATCAAGTTAGAAATTTTCACCACCTCATGCGCTACCCTATACATGTAGCCCACGATGGAACCATAACAACTCTTCCAGGATTTGAACATTTTCCTGACACCAAAGCTCGGATTTTGGGTTCCTATTCATATTTCCTTCCTTCAATTCTTACAACCTAA 2520 0.4341 MPELLHGILKVTIDEVDRLHTGCHLDFCQKGTTHKGKRFLAQVKGCLLCRPENLVLFNGNMRKIVGTRLYATVDLDKARVGRTRMIGNRPSNPKWNEDFEIYCAHRISNIIFTVKDGNPIGATLIGRAYVPVEQVRKHPIVKRWVQILDEEDHRPVPGHSRICVSVKFTSVTQDPTWSQGIRMPFSGAPRTFFNQREGCHVTLYQDAHAPRGVGVVPYIPISEGKDYLPARCWEDIYTAIMDAKHLVYITGWSVYTEIALVRDKEESNITLGELLKKKADEGVRVLLLIWKDITSVPELAKDGLMATHDEETAAYFRNTKVHCVLCPRNPDDGKSIIQGFQTSTMFTHHQKSVVVDAGFVGSSQKRSVVSFIGGLDLCDGRYDTRDHPLFSTLNTVHRNDFHQPNFPNASIDKGGPREPWHDIHCKLEGPIAWDVLYNFEQRWEKQVGKELLFSLDDLDYILVHPSVAQKSEVGEEDTWNVQLFRSIDGGAALGFPQVPNEVAELGLVSGKDNMIERSIQDAYINAIRRAKNFVYIENQYFLGSSYAWQATNDFVIENIGALHLIPKELTLKIVSKIEAKERFSVYIVIPMWPEGVPETESVQAILDWQRRTMEMMYSDIAGALAKFGIQAHPRDYLTFFCLGNREHKEPGEYTPPQEPEAESDYRRAQNSRRFMIYVHSKMMIVCVLVPSVDDEYIIVGSANINQRSMEGSRDSEIAMGAFQPRHLAWNGRARGEIYRFRRALWYEHLGDHGFDSKIFDNPEHLDCIGLVNRLAEENWDMYSKETFDQVRNFHHLMRYPIHVAHDGTITTLPGFEHFPDTKARILGSYSYFLPSILTT 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02958 839 SMART C2_3c 8 144 IPR000008 -
Vimu10g02958 839 CDD C2_plant_PLD 4 169 - -
Vimu10g02958 839 Pfam C2 domain 67 146 IPR000008 -
Vimu10g02958 839 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Vimu10g02958 839 SUPERFAMILY Phospholipase D/nuclease 185 455 - -
Vimu10g02958 839 FunFam Phospholipase D delta 223 460 - -
Vimu10g02958 839 Gene3D Endonuclease Chain A 500 724 - -
Vimu10g02958 839 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 344 381 IPR001736 GO:0003824
Vimu10g02958 839 Gene3D C2 domain 48 170 IPR035892 -
Vimu10g02958 839 SUPERFAMILY Phospholipase D/nuclease 507 750 - -
Vimu10g02958 839 PANTHER PHOSPHOLIPASE D 4 828 IPR015679 -
Vimu10g02958 839 PIRSF PLD_plant 1 839 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu10g02958 839 Pfam Phospholipase D Active site motif 344 381 IPR001736 GO:0003824
Vimu10g02958 839 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 64 170 IPR035892 -
Vimu10g02958 839 Gene3D Endonuclease Chain A 223 460 - -
Vimu10g02958 839 Pfam Phospholipase D C terminal 757 828 IPR024632 -
Vimu10g02958 839 SMART pld_4 344 381 IPR001736 GO:0003824
Vimu10g02958 839 SMART pld_4 674 708 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02958 Vimu-Chr10 40560920 40564362 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02958 4 839 Phospholipase D Gene Family (Wang group) AT3G15730 61.684 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02958 K01115 - gmx:100794115 1397.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02958 10 40560920 40564362 Vimu11g02783 11 48018629 48022128 ECH
Vimu10g02958 10 40560920 40564362 Vimu4g00144 4 923146 923468 ECH
Vimu10g02958 10 40560920 40564362 Vimu10g02957 10 40552632 40555972 ECH
Vimu10g02958 10 40560920 40564362 Vimu10g02958 10 40560920 40564362 ECH