Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02957 ATGTCGCGTTTGCTGCATGGGACTCTCAATGTGACCATATACGAGGTCGATACACTGCCAACTCTTAACGACTGCGATTTCAATCTCTGCTGCAAGGGTACAAATCGAAGCGTGAGGAAGAGATTCCTTTCCCAACTTAAGAGTTGTCTGTTCTGTCAATGCCAGGGCCAGCCCGGGTCTACCCAAACGGGTCTGTATGCAACGATTGATTTAGATAAGGCAAGAGTTGGAAGGACTAAAGTGCTAAATGATGAACCCTCCAACCCCAGGTGGAATGAGACCTTTCGCATATACTGTGCCCATTTGATCTCCCATGTTATATTCACTGTCAAACAAAAAGACCCCATTGATGCAACTCTAATCGGAAGAGCTTATGTCCCAGTTGAGCAAGTCGTGAACGGTAACATAGTGGACACATGGCTCCCAATATTAGACGAGGATCGTAACCCCATTCCAAGTTACTCAAAAATCCATGTCACGATGAAATTCTTTAATGTTTTGAATGCCATAAACTGGTCTGGAGGAATAAGAAGTCCGAGTTTTCAAGGAGTTCCCCACACTTTCTTCGGTCAAAGAACTGGTTGCAACGTTACTTTGTACCAAGATGCCCATGTTTCGGATGGTTTTCAGCCGTGGATTCCCTTGTCAGGAAGAAGGAATTATGAGTTTAGGAAATGCTGGGAGGATATTTACAGTGCCATTGTGGAGGCTAGGTACTTTATTTATATTACTGGCTGGTCTGTGTACACTGAAATATCCTTGATTAGGGACCCCATGCAGCCCAAGAGAATCACCCTTGGGGAACTTCTCAAGAGGAAAGCTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGATAGAACATCTGTGCCAGACTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGCTTACTTCAAAAACACGAAGGTGAATTGTGTTTTGTGTCCGCGCAACCCAGATGTTGGAAGAAGCATTGTGCAAGGTTTGGAAACTTCAACAATGTTCACTCATCACCAGAAGAGTGTAGTTGTTGATAGCCAATTTGTTGGTGCTGCGGTGGGACAACGACAAAAGAGAACAATAACAAGTTTTGTAGGTGGCATTGATCTTTGCGATGGGAGATACGATACTCAGGAACATCATCTATTTTCAACTTTGGACACAGTGCATAAAGATGACTTCCATCAACCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAGTTAGAAGGGAGTGCTGCTTGGGATGTTTTGTTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGTTCCTATTCCCTTCGAGCATGCTTAACGAATACTTTGTCCCTCGATCCACTGCGGCAACGACAAATGATAACGACACGTGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCCCCCCAGACCCAAAAGTTGCAGCTGAATCCGGCCTTGTTAGTGGGAACAACAACATCATTGATAGAAGTATTCAAGATGCATATATAAATGCTATTAGAAGAGCCCAAAACTTCATATACATTGAAAACCAATATTTCCTTGGGAGTTCATATGCCTGGCAAGCATCTGATATAGTAGTTGAGGATATTGGTGCATTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGATTTTCTGTGTATGTTGTCATACCAATGTGGCCAGAAGGCATACCTGAGAGTGATTCAGTTCAAGCAATACTAGATTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATAGCTCAAGCCATTCAAAGAACTGGAATTGAAGCTCACCCAAGAGACTACTTGACCTTTTTCTGCCTTGGAAGCCGTGAGGGTCAGAAATATAGCGAGTACACTCCTACTGAGGCACCAGAACCGGACACTGATTACAGCAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCGAACATAAACCAAAGATCAATGGATGGAGCAAGAGACAGTGAGATTGCGATGGGTGCATTCCAGCCACGGCATTTAGCGTTTAATGGGCCACCCAGAGGACAGATATATGGATTTCGACGTGCACTGTGGTATGAACACCTCGGAGATGTTAATGATAGTAGCATTTTCGACGATCCTGAAAGCGAAGAATGCATGAAGCTTGTGAATCATCTTGCTGAAACCAACTGGGCTCTGTACTCTGAGCAAACTTTTTATGAGAATACAGAATTTCACCACCTCATGCGTTATCCCATAGAAGTAACCAACCATGGAGCCATAACGAACCTTCCAGGGCTTCAATATTTTCCTGACACTAAGGCTCGGATTTTGGGTGCCAAATCAGATTATCTTCCTCCAATTCTCACCACTTAG 2484 0.4364 MSRLLHGTLNVTIYEVDTLPTLNDCDFNLCCKGTNRSVRKRFLSQLKSCLFCQCQGQPGSTQTGLYATIDLDKARVGRTKVLNDEPSNPRWNETFRIYCAHLISHVIFTVKQKDPIDATLIGRAYVPVEQVVNGNIVDTWLPILDEDRNPIPSYSKIHVTMKFFNVLNAINWSGGIRSPSFQGVPHTFFGQRTGCNVTLYQDAHVSDGFQPWIPLSGRRNYEFRKCWEDIYSAIVEARYFIYITGWSVYTEISLIRDPMQPKRITLGELLKRKAEEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETAAYFKNTKVNCVLCPRNPDVGRSIVQGLETSTMFTHHQKSVVVDSQFVGAAVGQRQKRTITSFVGGIDLCDGRYDTQEHHLFSTLDTVHKDDFHQPNFPGASIKKGGPREPWHDIHCKLEGSAAWDVLFNFQQRWEKQVGNQFLFPSSMLNEYFVPRSTAATTNDNDTWNVQLFRSIDGGAASGFPPDPKVAAESGLVSGNNNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYAWQASDIVVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYADIAQAIQRTGIEAHPRDYLTFFCLGSREGQKYSEYTPTEAPEPDTDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPRHLAFNGPPRGQIYGFRRALWYEHLGDVNDSSIFDDPESEECMKLVNHLAETNWALYSEQTFYENTEFHHLMRYPIEVTNHGAITNLPGLQYFPDTKARILGAKSDYLPPILTT 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02957 827 PIRSF PLD_plant 1 827 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu10g02957 827 CDD C2_plant_PLD 1 164 - -
Vimu10g02957 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 339 380 IPR001736 GO:0003824
Vimu10g02957 827 SUPERFAMILY Phospholipase D/nuclease 513 742 - -
Vimu10g02957 827 Pfam C2 domain 8 143 IPR000008 -
Vimu10g02957 827 SMART C2_3c 8 140 IPR000008 -
Vimu10g02957 827 ProSiteProfiles C2 domain profile. 1 141 IPR000008 -
Vimu10g02957 827 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 670 697 IPR001736 GO:0003824
Vimu10g02957 827 Pfam Phospholipase D C terminal 746 817 IPR024632 -
Vimu10g02957 827 FunFam Phospholipase D 483 716 - -
Vimu10g02957 827 Gene3D C2 domain 5 171 IPR035892 -
Vimu10g02957 827 SMART pld_4 670 697 IPR001736 GO:0003824
Vimu10g02957 827 SMART pld_4 339 380 IPR001736 GO:0003824
Vimu10g02957 827 FunFam Phospholipase D delta 217 459 - -
Vimu10g02957 827 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 165 IPR035892 -
Vimu10g02957 827 Gene3D Endonuclease Chain A 212 473 - -
Vimu10g02957 827 PANTHER PHOSPHOLIPASE D 4 815 IPR015679 -
Vimu10g02957 827 Pfam Phospholipase D Active site motif 671 697 IPR001736 GO:0003824
Vimu10g02957 827 Pfam Phospholipase D Active site motif 339 380 IPR001736 GO:0003824
Vimu10g02957 827 SUPERFAMILY Phospholipase D/nuclease 170 450 - -
Vimu10g02957 827 Gene3D Endonuclease Chain A 490 712 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02957 Vimu-Chr10 40552632 40555972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02957 4 827 Phospholipase D Gene Family (Wang group) AT3G15730 63.845 0.0 1085
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02957 K01115 - gmx:100791688 1422.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02957 10 40552632 40555972 Vimu10g02957 10 40552632 40555972 ECH
Vimu10g02958 10 40560920 40564362 Vimu10g02957 10 40552632 40555972 ECH