LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu10g02957	ATGTCGCGTTTGCTGCATGGGACTCTCAATGTGACCATATACGAGGTCGATACACTGCCAACTCTTAACGACTGCGATTTCAATCTCTGCTGCAAGGGTACAAATCGAAGCGTGAGGAAGAGATTCCTTTCCCAACTTAAGAGTTGTCTGTTCTGTCAATGCCAGGGCCAGCCCGGGTCTACCCAAACGGGTCTGTATGCAACGATTGATTTAGATAAGGCAAGAGTTGGAAGGACTAAAGTGCTAAATGATGAACCCTCCAACCCCAGGTGGAATGAGACCTTTCGCATATACTGTGCCCATTTGATCTCCCATGTTATATTCACTGTCAAACAAAAAGACCCCATTGATGCAACTCTAATCGGAAGAGCTTATGTCCCAGTTGAGCAAGTCGTGAACGGTAACATAGTGGACACATGGCTCCCAATATTAGACGAGGATCGTAACCCCATTCCAAGTTACTCAAAAATCCATGTCACGATGAAATTCTTTAATGTTTTGAATGCCATAAACTGGTCTGGAGGAATAAGAAGTCCGAGTTTTCAAGGAGTTCCCCACACTTTCTTCGGTCAAAGAACTGGTTGCAACGTTACTTTGTACCAAGATGCCCATGTTTCGGATGGTTTTCAGCCGTGGATTCCCTTGTCAGGAAGAAGGAATTATGAGTTTAGGAAATGCTGGGAGGATATTTACAGTGCCATTGTGGAGGCTAGGTACTTTATTTATATTACTGGCTGGTCTGTGTACACTGAAATATCCTTGATTAGGGACCCCATGCAGCCCAAGAGAATCACCCTTGGGGAACTTCTCAAGAGGAAAGCTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGATAGAACATCTGTGCCAGACTTCAAGAAAGATGGCTTGATGGCAACCCATGATCAAGAAACTGCTGCTTACTTCAAAAACACGAAGGTGAATTGTGTTTTGTGTCCGCGCAACCCAGATGTTGGAAGAAGCATTGTGCAAGGTTTGGAAACTTCAACAATGTTCACTCATCACCAGAAGAGTGTAGTTGTTGATAGCCAATTTGTTGGTGCTGCGGTGGGACAACGACAAAAGAGAACAATAACAAGTTTTGTAGGTGGCATTGATCTTTGCGATGGGAGATACGATACTCAGGAACATCATCTATTTTCAACTTTGGACACAGTGCATAAAGATGACTTCCATCAACCAAATTTCCCAGGTGCTTCCATCAAGAAAGGTGGTCCAAGAGAGCCATGGCATGATATTCACTGCAAGTTAGAAGGGAGTGCTGCTTGGGATGTTTTGTTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGTTCCTATTCCCTTCGAGCATGCTTAACGAATACTTTGTCCCTCGATCCACTGCGGCAACGACAAATGATAACGACACGTGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCAGCTTCTGGCTTCCCCCCAGACCCAAAAGTTGCAGCTGAATCCGGCCTTGTTAGTGGGAACAACAACATCATTGATAGAAGTATTCAAGATGCATATATAAATGCTATTAGAAGAGCCCAAAACTTCATATACATTGAAAACCAATATTTCCTTGGGAGTTCATATGCCTGGCAAGCATCTGATATAGTAGTTGAGGATATTGGTGCATTGCATCTTATACCAAAGGAGCTGTCATTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGATTTTCTGTGTATGTTGTCATACCAATGTGGCCAGAAGGCATACCTGAGAGTGATTCAGTTCAAGCAATACTAGATTGGCAAAGGAGGACAATGGAGATGATGTATGCTGATATAGCTCAAGCCATTCAAAGAACTGGAATTGAAGCTCACCCAAGAGACTACTTGACCTTTTTCTGCCTTGGAAGCCGTGAGGGTCAGAAATATAGCGAGTACACTCCTACTGAGGCACCAGAACCGGACACTGATTACAGCAGAGCACAAAAGTCTAGGCGATTCATGATCTATGTTCATGCCAAGATGATGATAGTTGATGATGAATACATAATCATTGGTTCTGCGAACATAAACCAAAGATCAATGGATGGAGCAAGAGACAGTGAGATTGCGATGGGTGCATTCCAGCCACGGCATTTAGCGTTTAATGGGCCACCCAGAGGACAGATATATGGATTTCGACGTGCACTGTGGTATGAACACCTCGGAGATGTTAATGATAGTAGCATTTTCGACGATCCTGAAAGCGAAGAATGCATGAAGCTTGTGAATCATCTTGCTGAAACCAACTGGGCTCTGTACTCTGAGCAAACTTTTTATGAGAATACAGAATTTCACCACCTCATGCGTTATCCCATAGAAGTAACCAACCATGGAGCCATAACGAACCTTCCAGGGCTTCAATATTTTCCTGACACTAAGGCTCGGATTTTGGGTGCCAAATCAGATTATCTTCCTCCAATTCTCACCACTTAG	2484	0.4364	MSRLLHGTLNVTIYEVDTLPTLNDCDFNLCCKGTNRSVRKRFLSQLKSCLFCQCQGQPGSTQTGLYATIDLDKARVGRTKVLNDEPSNPRWNETFRIYCAHLISHVIFTVKQKDPIDATLIGRAYVPVEQVVNGNIVDTWLPILDEDRNPIPSYSKIHVTMKFFNVLNAINWSGGIRSPSFQGVPHTFFGQRTGCNVTLYQDAHVSDGFQPWIPLSGRRNYEFRKCWEDIYSAIVEARYFIYITGWSVYTEISLIRDPMQPKRITLGELLKRKAEEGVKVLMLVWDDRTSVPDFKKDGLMATHDQETAAYFKNTKVNCVLCPRNPDVGRSIVQGLETSTMFTHHQKSVVVDSQFVGAAVGQRQKRTITSFVGGIDLCDGRYDTQEHHLFSTLDTVHKDDFHQPNFPGASIKKGGPREPWHDIHCKLEGSAAWDVLFNFQQRWEKQVGNQFLFPSSMLNEYFVPRSTAATTNDNDTWNVQLFRSIDGGAASGFPPDPKVAAESGLVSGNNNIIDRSIQDAYINAIRRAQNFIYIENQYFLGSSYAWQASDIVVEDIGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESDSVQAILDWQRRTMEMMYADIAQAIQRTGIEAHPRDYLTFFCLGSREGQKYSEYTPTEAPEPDTDYSRAQKSRRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPRHLAFNGPPRGQIYGFRRALWYEHLGDVNDSSIFDDPESEECMKLVNHLAETNWALYSEQTFYENTEFHHLMRYPIEVTNHGAITNLPGLQYFPDTKARILGAKSDYLPPILTT	827

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu10g02957	827	PIRSF	PLD_plant	1	827	IPR011402	GO:0004630\|GO:0005509\|GO:0016020\|GO:0046470
	Vimu10g02957	827	CDD	C2_plant_PLD	1	164	-	-
	Vimu10g02957	827	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	339	380	IPR001736	GO:0003824
	Vimu10g02957	827	SUPERFAMILY	Phospholipase D/nuclease	513	742	-	-
	Vimu10g02957	827	Pfam	C2 domain	8	143	IPR000008	-
	Vimu10g02957	827	SMART	C2_3c	8	140	IPR000008	-
	Vimu10g02957	827	ProSiteProfiles	C2 domain profile.	1	141	IPR000008	-
	Vimu10g02957	827	ProSiteProfiles	Phospholipase D phosphodiesterase active site profile.	670	697	IPR001736	GO:0003824
	Vimu10g02957	827	Pfam	Phospholipase D C terminal	746	817	IPR024632	-
	Vimu10g02957	827	FunFam	Phospholipase D	483	716	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu10g02957	Vimu-Chr10	40552632	40555972	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu10g02957	4	827	Phospholipase D Gene Family (Wang group)	AT3G15730	63.845	0.0	1085

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu10g02957	K01115		-	gmx:100791688	1422.14

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vimu10g02957	10	40552632	40555972	Vimu10g02957	10	40552632	40555972	ECH
	Vimu10g02958	10	40560920	40564362	Vimu10g02957	10	40552632	40555972	ECH

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