Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02956 ATGGTACAAGCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCATCCTTTACTGAAGAGAAGGGTCTGGCTAGGCACCTTTGAGACAGCTGAGGCTGCTGCAAGGGCTTATGATCAAGCAGCCATTTTGATGAATGGTCAGAATGCCAAGACTAACTTCCCCAAGAACCAAGCTCAGCCTGATGCTACCACCTCCACCCCTTCTGCTGCTTCTTCTGCTGATCATGACAACGCTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACTAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCCCTCACTTGTCTCAGGCTCGATGCTGATAACTCCCACATTGGAGTCTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAATTGGGTCATGAGGGTGGAGCTTGGGAAGAAGCAGACCCAGACTCAATCAGCATGGTCGCCCAGCAGTAGTGTTAATGACACTGCTGGAAACAATGGAGGAGTAGTAGTAGAAGAAGAAGAAGAGGAGGAGGAGGATAGACTCGCTTTGCAGATGATCGAGGAGCTACTCAATTGGAACTAG 597 0.5042 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPKNQAQPDATTSTPSAASSADHDNAFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTQTQSAWSPSSSVNDTAGNNGGVVVEEEEEEEEDRLALQMIEELLNWN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02956 198 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
Vimu10g02956 198 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vimu10g02956 198 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Vimu10g02956 198 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vimu10g02956 198 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 159 - -
Vimu10g02956 198 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vimu10g02956 198 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vimu10g02956 198 MobiDBLite consensus disorder prediction 60 84 - -
Vimu10g02956 198 MobiDBLite consensus disorder prediction 151 169 - -
Vimu10g02956 198 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vimu10g02956 198 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Vimu10g02956 198 MobiDBLite consensus disorder prediction 60 86 - -
Vimu10g02956 198 MobiDBLite consensus disorder prediction 151 170 - -
Vimu10g02956 198 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02956 Vimu-Chr10 40540945 40541647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02956 1 197 AP2-EREBP Transcription Factor Family AT5G25390 59.000 2.09e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g02956 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02956 - - gmx:100806821 282.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02956 10 40540945 40541647 Vimu10g02956 10 40540945 40541647 ECH
Vimu7g01023 7 9965675 9966559 Vimu10g02956 10 40540945 40541647 ECH
Vimu10g00897 10 7996986 7997783 Vimu10g02956 10 40540945 40541647 ECH