Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02954 ATGGCGATAATAGGGAGGAGAGTTTCGGGAGAAGGAACCATTGAGTATTGTGAGGTCACCATTAGGGTTCTATTTGAGGTTCAGAAGGGCACAGAAGGAGATTGCTTTAAGAAGTCAGAGGGAGAACTAGGTAATGGAGAACGAGGAGTGCATAGTGACCTGAGAGTTAACGATGAAGAGGAATTAACCAAGTATGGAGAGCTAATTTCGTTCTTTTTGAATTATTGTGGGAGAGATGTTCAGGGGAAATGTGTCTTCTTTGTGTTTGTGAGGGAGTGTGCTGGTTGTGGTGTGATTTGGTCCAATTTTCTGCATTTTTTGAAACCAGTATCCAAATTATATTTCAGAAAGTTATATGTTGTTGATGCACGACCAAGAAAAAATGCATTGGCTAATGGAGCCATGGGAGGTGGTTCAGAATTATCATCAAACTATTTTCAATCCGAGATAGTCTTGTTGGGGATAGACAACATCCATGCGAAGAGACAGATTTGTTCGGCTTTGAAAATACATGGACACTCATGGCAAAGCATCATCAGATGGACTGTCCTCTTTCTTGGTTAG 564 0.4113 MAIIGRRVSGEGTIEYCEVTIRVLFEVQKGTEGDCFKKSEGELGNGERGVHSDLRVNDEEELTKYGELISFFLNYCGRDVQGKCVFFVFVRECAGCGVIWSNFLHFLKPVSKLYFRKLYVVDARPRKNALANGAMGGGSELSSNYFQSEIVLLGIDNIHAKRQICSALKIHGHSWQSIIRWTVLFLG 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02954 187 PANTHER MYOTUBULARIN-RELATED 116 165 IPR030564 -
Vimu10g02954 187 ProSiteProfiles Myotubularin phosphatase domain. 1 187 IPR010569 -
Vimu10g02954 187 Pfam Myotubularin-like phosphatase domain 115 168 IPR010569 -
Vimu10g02954 187 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 114 166 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02954 Vimu-Chr10 40521599 40522596 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02954 109 172 Protein tyrosine phosphatase (PTP) family AT3G10550 69.118 1.02e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02954 K18081 - vum:124824561 162.155