Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02946 AATTTGAGCACTATCTTTCTTCATTCCCAAACCATGATGAAGCTCTTTTCCTTAGTAATATTTTCAAGCCTTTTTCTCAAACAAGTGAGCCTGGTTAATGGAGACGTTGGCACTGCTGCATCTTATGGACCTCCATACATACCTACTGCTTGCGGTGGAAACAGGGCAGGGCAATTTCCTCCTGGAAATCTATTTGTAGCTGTGAATGAAGGGTTATGGGATAATGGAGCAGCGTGTGGAAGGAGATACAGAATAAGGTGTGTGAGTGGAAACAACAGACCATGCAAAGGTGGCAGCATCGATGTCAAAGTGGTAGATGCTTGTCCTGGCTCACCTTGTCCCAACAGCCTCCTCATGTCAAATGATGCCTTTGCAGCTATTTCACGCTTCCCTCATGCAAAAATCAACATTGAATATACCCAGTAA 426 0.4413 NLSTIFLHSQTMMKLFSLVIFSSLFLKQVSLVNGDVGTAASYGPPYIPTACGGNRAGQFPPGNLFVAVNEGLWDNGAACGRRYRIRCVSGNNRPCKGGSIDVKVVDACPGSPCPNSLLMSNDAFAAISRFPHAKINIEYTQ 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02946 141 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 141 IPR007112 -
Vimu10g02946 141 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 9 140 - -
Vimu10g02946 141 CDD DPBB_EG45-like 35 140 - -
Vimu10g02946 141 Gene3D - 35 141 IPR036908 -
Vimu10g02946 141 SUPERFAMILY Barwin-like endoglucanases 33 141 IPR036908 -
Vimu10g02946 141 Pfam Lytic transglycolase 67 139 IPR009009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02946 Vimu-Chr10 40457970 40458543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02946 13 129 Expansin Gene Family AT2G45110 29.851 3.27e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02946 - - ccaj:109795996 239.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02946 10 40457970 40458543 Vimu10g02946 10 40457970 40458543 ECH