Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02943 ATGAGTGCGGCGTTTCAGTGTTTATCGTGTGCGAGGACCGAACCTTTCCTCCTCACACCAGCCCAATCCCTCACTCTTCCTTTCCAACGAAAACCATTTTTCTGCTCTCTTCCTCTTTCCTCTCGCGCTCGTAACCTCTCTTCTTCAATCGTCTCTGCTTCTTCCAAAAAGAAAAAAAACAAGAAAAAACTCTCTCGTCATCATGTTACCGAGGGCGGCGAGGAGGATATGGACGCGTTTGAGCTTCTCTTCAACCAGCTCGAACAAGATCTCAAACGCGGCGATTTGTCAGATGATGATGGCGAAGATGGGATAACTGAAGAAGAGATGGCATTGCTTGAACGTGAGCTGGAAAATGCCTTGGGGGACTTTGATACTGAATTGTTGAACTCGGATGTAATCGACGTAGAACTTGGTAGTGGTCCAGAGAATGATGATGAGGATGGTGATGATGATGATGATGGTGAGAGTCAGGATGGAGATGAAAACCCAGTGAACCTTAAGAATTGGCAGATGAAGAAATTGGCTAGAGCTTTGAAAGCCGGCCGCCGCAAAACAAGTGATATATGTGGTTATGGTGACAATGGTGTCCACCTGAGTGTTACTCGTTGGCCCTATTTGGTAAGCCCTGCCTCATCCAGTGCATATGTGCTTCTTCGTTGGCCCTGCTTCTTCGTGATAAAAAATCTTGCTGCCGATCTTTGTCTTGATAGAGCTCTTGTTCTTCAGTTACTTCGTGAACCTCCTCCAAATCTCTTAATGATGAGCCTTACAATACCTGATGAACCTGCAACAACAGTAGTATCACTTGAAACTAAGCCCAGTGAGATTCTCCTTGAAGAAACAAGTATTGATCAAGTTGAATCTGAACCCGAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGTATGCTCAAAAGCGATTGAAGAAGGTCCATGTTGACACTCTGGAGAGAGTTTATAGGAAATCAAAACGACCTACTAATGCAATGATCAGCAGCATTGTACATGTAACAAACATTCCTCGAAAAAGAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCATCGTCTTCCTTACCAGCGCCATGTTCCTGAAACGGCTTGA 1128 0.4477 MSAAFQCLSCARTEPFLLTPAQSLTLPFQRKPFFCSLPLSSRARNLSSSIVSASSKKKKNKKKLSRHHVTEGGEEDMDAFELLFNQLEQDLKRGDLSDDDGEDGITEEEMALLERELENALGDFDTELLNSDVIDVELGSGPENDDEDGDDDDDGESQDGDENPVNLKNWQMKKLARALKAGRRKTSDICGYGDNGVHLSVTRWPYLVSPASSSAYVLLRWPCFFVIKNLAADLCLDRALVLQLLREPPPNLLMMSLTIPDEPATTVVSLETKPSEILLEETSIDQVESEPEAKVPVHTLQRNWYAQKRLKKVHVDTLERVYRKSKRPTNAMISSIVHVTNIPRKRVVKWFEDKRAEEGVPDHRLPYQRHVPETA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02943 375 Pfam Homeodomain 310 357 IPR001356 GO:0003677
Vimu10g02943 375 MobiDBLite consensus disorder prediction 136 167 - -
Vimu10g02943 375 SMART HOX_1 307 365 IPR001356 GO:0003677
Vimu10g02943 375 SUPERFAMILY Homeodomain-like 303 362 IPR009057 -
Vimu10g02943 375 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 20 368 - -
Vimu10g02943 375 MobiDBLite consensus disorder prediction 50 71 - -
Vimu10g02943 375 Gene3D - 302 359 - -
Vimu10g02943 375 ProSiteProfiles 'Homeobox' domain profile. 301 361 IPR001356 GO:0003677
Vimu10g02943 375 CDD homeodomain 307 356 IPR001356 GO:0003677
Vimu10g02943 375 MobiDBLite consensus disorder prediction 139 160 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Vimu10g02943 Homeodomain 8.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02943 - - gmx:100798718 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02943 10 40431650 40436359 Vimu10g02943 10 40431650 40436359 ECH