Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02932 ATGGAAGGGCTCAAACATATTCACGAGCCCGGTTCCGTTCACTACGACGTGAAGCTTCAGAACGTTCTCGTTTTCGATGGTGAGGTGAAAATAGCAGACTTCGGGCTCACCAAGGAGAAGGGGGAGAAACATGCGAAGTGCGAGTCCAGGGGAACGTCGTTGTTTATGTCGCCGGAATCGGTGAACGACAATGAATATGAGCCACCGACGGATATTTGGGCCCTGGGATGCGCCGTTGTGGAGATGGTGACCGGAAAACCCGCGTGCGATGTTAGCAATGGTTCCAGTATTTTGAAATTGTTGATTCGGATTGGAGTGGGAGAAGAATTGCCAAGATTCCAGAAGAATTATCGAAAGAGGGGAAGGACTTTTTGGAGAAGTGCTTTGTTAAGGATCCCAAGAACAAGTGGAGCGCTGATATGCTTTTGA 429 0.4895 MEGLKHIHEPGSVHYDVKLQNVLVFDGEVKIADFGLTKEKGEKHAKCESRGTSLFMSPESVNDNEYEPPTDIWALGCAVVEMVTGKPACDVSNGSSILKLLIRIGVGEELPRFQKNYRKRGRTFWRSALLRIPRTSGALICF 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02932 142 SUPERFAMILY Protein kinase-like (PK-like) 2 107 IPR011009 -
Vimu10g02932 142 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 2 133 - -
Vimu10g02932 142 ProSiteProfiles Protein kinase domain profile. 1 142 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02932 142 Gene3D Transferase(Phosphotransferase) domain 1 1 137 - -
Vimu10g02932 142 SMART serkin_6 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02932 142 Pfam Protein kinase domain 1 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02932 Vimu-Chr10 40354946 40355374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02932 1 134 MAP Kinase Kinase Kinase AT5G67080 49.275 6.66e-40 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vimu10g02932 Pkinase 6.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02932 - - vum:124819620 192.971