Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02922 ATGGAAGCACCATTTAAGGGAATAATTGAAGATGTCAAGGGAAGAATTCAGTGCTATAAACAAGATTGGATTTGTGATATCTGTTCTGGTCCTAGCACATGGGCTCCAACTTTCTACATATTCTTTGCCTCTGCCCTCCCTGTTATTGTTTTTGGGCAGCAACTTCATAGGGATACTGATGGAAGTATGGGCATAGTGGAAACAATGGCATCTACTGCTATTTGTGGAATTATCCACTCAATATTTGGTGGCCAACCTTTGTTGATTTTAGGTGTTGCTGAACCCACTGTCATAATGTACACTTACTTGTACAGTATTTGCGAGAGAACCCCTGCACTGGGTAGAGAGCTCTTTCGGGCAGCGCTTAGTTGGGTTTGTGTTTGGACGGGATTCTTCCTGGTGGTGCTTGCAATTTTTAATGCTTGCACAATTATCTCAAGGTTTACAAGAATTGCTGGGGAGTTATTTGCCATGCTCATAACTGTTCTTTTCTTTCAAGAGGCTGTAAAGGGATTGATAGGAGAGTTCAACGTGGTCAATAAAGGAAATCCTTCTGCAGAGGAATTTCAATTCCACTGGCTGTATACAAATGGATTACTTGCTATCATTTTTGGTATAGGATTACTTTTCACTGCCCTAATAAGCAGAAGAGCAAGATCGTGGAAATATGGAACAGGGTGGCTACGAGGATTTATAGCAGATTATGGGATTCCACTGATGGTAGTGTTATGGACTGCACTATCTTATGCTGTACCAAGAAAAGTTCCAGATGGCATTCCTAGAAGGCTTTTTTCTCCTCTACCGTGGGAACCTGAATCACTCTATCACTGGACAGTAGTGAAGGTAGGCAAATCTAAACATCCATCTAACAGTTACTGCAAAATGCAGGATATGTGGAAAGTACCCCCAGCTTATGTATTTGGGGCAAGTATTCCAGCTCTGATGATAGCAGGGTTATACTTTTTTGATCACAGTGTAGCTTCGCAGATGGCACAACAGAAAAAATTTAACCTTCAAAAACCATCAGCCTACCACTATGACGTTTTCCTGCTTGGAATAATGACTCTGATTTGTGGGCTCCTTGGTCTTCCTCCTTCAAATGGAGTTCTTCCACAGTCCCCCATGCATACAAAAAGTTTAGCAGTTCTTAGGAAGAAGGCTAAAGAATTGGAGAGTTCAAAGGAATATAGGAACAATGGTGGTGCGGAAGAAAGTTTTGATGAGAAACAGAGATATGAATATCTACCGGTCGAGGTTCATGAGCAAAGAGTGACGAACCTTTTGCAGTCTGTCCTGGTCGGTGTCTCAATCCTAGCCATGCCTGTAATCAGAGAGATACCAACCTCAGTTCTATGGGGATATTTTGCTTACATGGCAATTGATAGTCTCCCAGGAAATCAGTTCTGGGAAAGGATATTGCTCCTCTTCATCACCCCAGGCCGCCGTCACAAAATTTTCGAAGATTTTCATCCCTCTTTTCTGGAGAAAGTACCATTCAAGATCATAGTTACATTTACACTCATACAGTTAGGATATTTTTTAATATGTTACGGGGTAACTTGGATTCCTTTTGTTGGAATACTGTTCCCTGTACCATTCTTCCTTCTCATATTCGTAAGAGAGCGCTTGCTTCCAAAGATATTCAAGCCTAACCATCTCGAAGAACTAGATGCTTCTGGGTATGAGGAAATTGTTGGAGTTCCACCTGCTTTAAAAATGGATATGGAGTCAGATACTGATGATGTAGGAAGCGAAGAGGACTTCTCCGATGCAGAGATATTAGATGAGATGACAACCAACAGGGGAGAGTTTGTCCTAGAGATGCTGTCTGAAGATGGTGAAATCTGTCTGCGCATAGCATTGCTTATGATGCAGAAAAAGGGTTTCATATAA 1893 0.4163 MEAPFKGIIEDVKGRIQCYKQDWICDICSGPSTWAPTFYIFFASALPVIVFGQQLHRDTDGSMGIVETMASTAICGIIHSIFGGQPLLILGVAEPTVIMYTYLYSICERTPALGRELFRAALSWVCVWTGFFLVVLAIFNACTIISRFTRIAGELFAMLITVLFFQEAVKGLIGEFNVVNKGNPSAEEFQFHWLYTNGLLAIIFGIGLLFTALISRRARSWKYGTGWLRGFIADYGIPLMVVLWTALSYAVPRKVPDGIPRRLFSPLPWEPESLYHWTVVKVGKSKHPSNSYCKMQDMWKVPPAYVFGASIPALMIAGLYFFDHSVASQMAQQKKFNLQKPSAYHYDVFLLGIMTLICGLLGLPPSNGVLPQSPMHTKSLAVLRKKAKELESSKEYRNNGGAEESFDEKQRYEYLPVEVHEQRVTNLLQSVLVGVSILAMPVIREIPTSVLWGYFAYMAIDSLPGNQFWERILLLFITPGRRHKIFEDFHPSFLEKVPFKIIVTFTLIQLGYFLICYGVTWIPFVGILFPVPFFLLIFVRERLLPKIFKPNHLEELDASGYEEIVGVPPALKMDMESDTDDVGSEEDFSDAEILDEMTTNRGEFVLEMLSEDGEICLRIALLMMQKKGFI 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02922 630 Pfam HCO3- transporter family 4 177 IPR011531 GO:0006820|GO:0016020
Vimu10g02922 630 Pfam HCO3- transporter family 197 508 IPR011531 GO:0006820|GO:0016020
Vimu10g02922 630 PANTHER ANION EXCHANGE PROTEIN 3 565 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02922 Vimu-Chr10 40296388 40300239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02922 4 610 Antiporters AT4G32510 59.970 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02922 K24194 - gmx:100792745 889.412
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02922 10 40296388 40300239 Vimu10g02922 10 40296388 40300239 ECH
Vimu10g02922 10 40296388 40300239 Vimu4g00186 4 1219939 1223682 ECH
Vimu10g02922 10 40296388 40300239 Vimu1g02576 1 37206270 37210845 ECH
Vimu1g02576 1 37206270 37210845 Vimu10g02922 10 40296388 40300239 PCT