Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02914 ATGTCTCAGACTAACTGGGAAGCTGACAAGATGTTAGATGTTTATATCCACGATTATCTTGTCAAGAGAGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCCTCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGATATCTTTATTGCTAGGACCAACGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAACAACAGCAACCACAATCCCAGCAGTCACAGCATCAACAGCAGCAACAACAACACATGCAGATGCAACATCTCCTCTTGCAGAGAGCACAACAACAGCAACAGCAGCAGCAACAGCAACAACAACAGCAATCCCAACAGCAACAGCCTCAACCACAACAACAACAAAGCAGGGATAGGGCTCACCTTTTAAATGGTAGTTCAAATGGATTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTAGATGATCCAGCACTGAAGCAAAGATTTGGTGAGAACATGGGCCAACTTTTGGATCCAAGTCATGCATCGATATTGAAGTCAGCTGCAGCCCCTGGCCAACCTTCTGGAATCAATGTTCATATATTCCCTGTTAAAAAAGTTATGGGTCTTGACTTTGCTTGTACCAAATTTCTTGATTTCAGGCAAGTTTTACATGGTGCTGCTGGGGGGATGTCTCCACAAGTTCAAGCACGTACTCAGCAATTACCAGGGTCTACTCTGGACATAAAAGGCGAGATTAGTCCTGTTTTAACTCCCAGAGCTGCTGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCAAGGTAGCAATAATTTGACTTTGAGAGGGTGGCCACTCACTGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAATCTTTCATGCAGGCTCCGCAGCCTTTTCATCAAATACAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTAGCACAACAAAATTTGGCGTCACCATCTGCCACTGAAGAAAGTAGAAGACTAAGAATGCTTTTGAATAATAGGGGTATTGGTCTAAACAAGGACGGTCTTTCAAATCCTGTTGGTGATGTGGTATCTAATGTCGGATCTCCTCTTCAAGGTGGTGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGGTGAAACTGGCTCAGCTACAGCAGCAACATCAACAACAATCAAGTACCAATGCACAGCAGCAGCAGCAGCTTCAACAACATGCTCTTTCAAACCAGCAATCCCAGACTTCTAATCATAGCATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGTGGATGGTGGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAATCAAATTGGGAGAAAGAGAAAGCAGCCTGGATCATCGTCGGGTCCTGCCAACAGTACAGGCACAGCAAATACGACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCCTCAACACATACGCCTGGAGATGTGATATCGATGCCTGCCTTGCCCAATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGTACTGGAGCCCTTACATCATCTTCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCACTAGATGAAAATGTTGAGTCTTTTTTGTCCCAGGATGATACAGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTACTGATGTAAGTTCTGTACGGGCAAGCACAAGTAAAGTTGCCTGTTGCCATTTCTCATCCGATGGTAAATTACTTGCAAGTGGGGGGCATGACAAAAAGGCTGTTTTATGGTACACGGATTCTCTTAAACAAAAAGCTACTCTTGAAGAACATTCATCTTTGATCACTGATGTTCGGTTCAGTCCAAGCATGCCTCGTCTTGCAACTTCTTCATTTGACAGAACTGTCAGGGTTTGGGATGTTGACAATGTTAAAGTAGAAGAATTTTGTGCAATTCTTGTAGCTGAATATATAATTACCATGCAGCCTGGTTATTCTCTACGCACCTTCACGGGACATTCTTCAACTGTTATGTCACTAGATTTTCATCCAAATAAGGATGACCTCATCTGCTCATGTGACGGCGATGGTGAGATACGATACTGGAGCATAAACAATGGCAATTGTGCTAGAGTCTGGAAGGGTGGCACCACCCAGATGAGATTTCAGCCTCGTCTAGGGAGGTACCTTGCTGCAGCAGCAGAGAATATTGTGTCTATATTTGATGTGGAGACACAAGTGTGTCGATATTCATTAAAGGGACACACAAAAACGGTGGACTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTAGCATCTGTGAGTGAGGACTCTGTGAAGGTGTGGTCTCTTGGATCTGGGAGTGAAGGGGAATGTGTTCATGAACTTAGCTGTAATGGCAGCAAGTTTCATGCATGTGTTTTCCACCCAACATACCCTTCACTGCTGGCCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGAGCGAGAACAAGACAATGACTCTGTCTGCTCATGATGGTCTTATTACTGCCTTGGCTGTTTCAACTGTAAATGGTTTGATTGCTTCTACCAGTCATGACAAGTTCCTCAAGCTCTGGAAAATTCTGACAAAACGTCATTCTACCACGGTCATGGCCGAAAGCGCATGGCAGTAA 2862 0.4486 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQSQQSQHQQQQQQHMQMQHLLLQRAQQQQQQQQQQQQQQSQQQQPQPQQQQSRDRAHLLNGSSNGLVGNPGTANALATKMYEERLKLPLQRDSLDDPALKQRFGENMGQLLDPSHASILKSAAAPGQPSGINVHIFPVKKVMGLDFACTKFLDFRQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLTPRAAGPEGSLMGMPGSNQGSNNLTLRGWPLTGLEQLRSGLLQQQKSFMQAPQPFHQIQMLTPQHQQQLMLAQQNLASPSATEESRRLRMLLNNRGIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLMKVKLAQLQQQHQQQSSTNAQQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTVDGGMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPALPNSGSSSKPLMMFGTDGTGALTSSSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSQDDTDPRDTVGRCMDVSKGFTFTDVSSVRASTSKVACCHFSSDGKLLASGGHDKKAVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDRTVRVWDVDNVKVEEFCAILVAEYIITMQPGYSLRTFTGHSSTVMSLDFHPNKDDLICSCDGDGEIRYWSINNGNCARVWKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKTVDCVCWDPSGELLASVSEDSVKVWSLGSGSEGECVHELSCNGSKFHACVFHPTYPSLLAIGCYQSLELWNMSENKTMTLSAHDGLITALAVSTVNGLIASTSHDKFLKLWKILTKRHSTTVMAESAWQ 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02914 953 MobiDBLite consensus disorder prediction 428 558 - -
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 675 716 IPR001680 GO:0005515
Vimu10g02914 953 MobiDBLite consensus disorder prediction 480 539 - -
Vimu10g02914 953 SUPERFAMILY WD40 repeat-like 631 936 IPR036322 GO:0005515
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 904 937 - -
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 904 945 IPR001680 GO:0005515
Vimu10g02914 953 Gene3D - 785 951 IPR015943 GO:0005515
Vimu10g02914 953 ProSitePatterns Trp-Asp (WD) repeats signature. 694 708 IPR019775 -
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 737 775 - -
Vimu10g02914 953 CDD WD40 633 936 - -
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 737 779 IPR001680 GO:0005515
Vimu10g02914 953 MobiDBLite consensus disorder prediction 89 169 - -
Vimu10g02914 953 SMART Lish 8 40 IPR006594 GO:0005515
Vimu10g02914 953 FunFam Transcriptional corepressor LEUNIG 780 936 - -
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 819 859 IPR001680 GO:0005515
Vimu10g02914 953 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 936 - -
Vimu10g02914 953 Coils Coil 427 447 - -
Vimu10g02914 953 Pfam WD domain, G-beta repeat 815 850 IPR001680 GO:0005515
Vimu10g02914 953 Pfam WD domain, G-beta repeat 634 664 IPR001680 GO:0005515
Vimu10g02914 953 Pfam WD domain, G-beta repeat 899 936 IPR001680 GO:0005515
Vimu10g02914 953 Pfam WD domain, G-beta repeat 733 770 IPR001680 GO:0005515
Vimu10g02914 953 Pfam WD domain, G-beta repeat 672 707 IPR001680 GO:0005515
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 675 710 - -
Vimu10g02914 953 Gene3D - 608 722 IPR015943 GO:0005515
Vimu10g02914 953 MobiDBLite consensus disorder prediction 428 468 - -
Vimu10g02914 953 MobiDBLite consensus disorder prediction 89 168 - -
Vimu10g02914 953 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vimu10g02914 953 Coils Coil 114 141 - -
Vimu10g02914 953 Pfam LisH 10 36 IPR006594 GO:0005515
Vimu10g02914 953 ProSiteProfiles Trp-Asp (WD) repeats profile. 633 674 IPR001680 GO:0005515
Vimu10g02914 953 Gene3D - 723 784 IPR015943 GO:0005515
Vimu10g02914 953 SMART WD40_4 626 665 IPR001680 GO:0005515
Vimu10g02914 953 SMART WD40_4 897 936 IPR001680 GO:0005515
Vimu10g02914 953 SMART WD40_4 668 707 IPR001680 GO:0005515
Vimu10g02914 953 SMART WD40_4 773 809 IPR001680 GO:0005515
Vimu10g02914 953 SMART WD40_4 730 770 IPR001680 GO:0005515
Vimu10g02914 953 SMART WD40_4 812 850 IPR001680 GO:0005515
Vimu10g02914 953 SMART WD40_4 856 895 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02914 Vimu-Chr10 40213276 40221446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02914 731 939 Miscellaneous Gene Families AT5G08390 24.299 1.02e-12 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vimu10g02914 WD40 0.022 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02914 - - gmx:100816263 1308.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02914 10 40213276 40221446 Vimu10g02914 10 40213276 40221446 ECH
Vimu1g02555 1 36987194 36994647 Vimu10g02914 10 40213276 40221446 PCT