Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02891 ATGGCTGTGCTGCTGAGAATGGCTCAGCCTCACAATGGCAACACCAGCAACACTTTCAACCAGACTTTGGTCCTTCACGACTTTCTGGGCATGAAGCCCGCAGCTGATTCTCCAAAAACCACCGATGTAAGGTTGTCGGAACCGTCAGCCTCCGCCTCCTCCGCTGGTGGACGTGGCCCTTTCTCGGCCACCTCCGACATCGCTTCTGAGAAACAGGTAGGAAACCATCTTGAGGGAGTTCCTTTCTATGGCCCAAGGAGTGATCTTTCTGGTGCTGAGATCAGTAACAGATTAGTGGGAAGCAAGAGAAGTAATTCTGATTCCGCTTTTACTGGTTCCTCCAGAGATGCCTTCCAAATGGTCCCTGATTCATATCAAAACTCACATTTGATGAAGGTTCTCCGGAATGCAGCTGGAGATAGGTCTAGAAGGCCCAATGATGAGGAAGTGTTACTTGGTATGCAGTCAATGAAACAATCTTCTTCTCAGATATTTCAGCCTCCCACCAGCGCTAAGATTGATGCCAATAAGTGGGAACGATCTATTCTCATGAATGTTGGCCCTTCCATGCAGTATCCGCCCCGTGGAGGGCAATTGGCACCTTTTGTCCACCAAATGGCCTCAAGCAAGATCAGGGATACCAATGCTGGCCCTTCCTTCATTTCTCAGTCTGCTGCTGATGAAGGATCTAGAACTGGAATCAAGGGCCCTGGAATTTTAAGTTCTATAAACGTTGCTGCTATGAGTGCTGAGAAAACTCCTTCTGCTGTGATGCTTGGTGGCAGCAGGCCAAAGCCTGGAAGTAATATCATAGAATCATCCACGCCTCCAAGTCAACCCACCCTAACTTCTGCCAGCCGTCAGATGACTATATTTTATGGAGGCCAAGCTCATGTTTTTGATGATGTCCATCCTCATAAGGCTTATCAGAATAGAAAACGCAGGCTTATGACAAATGTGAGATGTCCAATTCGGAAAGTGTTGAAGCATTTGTCCAAATCTCTGTGTAAAGATTGCAACTTTGATTTTTGTGCCTTCTCTACACTTTTGTATGATAACTTCAAGGCAGATGTTATAATGGCTTTGGCCGGGTCAAATGGCGGATCTTGGTCGACTGCGTTCTCGCCTAAATCTGCTGTGAAAATGGTTAGTGATGGGAACCTGCACAGTGGAGAAAATGAAACAGGTGTAGTGAATAATGTAGCATTCCCACAGGAGCTTCATGGGAAGCTGTCTATCACTGCAAGTTCTAGCCATGCCATGGGGCCTGGTGATCGAGTAACTACTCCTGCAGGGGCACAGAAAGGTAGTGTTTTTGCTAAAGATACCAGAAATCCAGTTCAAGCATCAGATCCCAGTGCTGAAGACAAAAGAGGACAATGA 1383 0.4685 MAVLLRMAQPHNGNTSNTFNQTLVLHDFLGMKPAADSPKTTDVRLSEPSASASSAGGRGPFSATSDIASEKQVGNHLEGVPFYGPRSDLSGAEISNRLVGSKRSNSDSAFTGSSRDAFQMVPDSYQNSHLMKVLRNAAGDRSRRPNDEEVLLGMQSMKQSSSQIFQPPTSAKIDANKWERSILMNVGPSMQYPPRGGQLAPFVHQMASSKIRDTNAGPSFISQSAADEGSRTGIKGPGILSSINVAAMSAEKTPSAVMLGGSRPKPGSNIIESSTPPSQPTLTSASRQMTIFYGGQAHVFDDVHPHKAYQNRKRRLMTNVRCPIRKVLKHLSKSLCKDCNFDFCAFSTLLYDNFKADVIMALAGSNGGSWSTAFSPKSAVKMVSDGNLHSGENETGVVNNVAFPQELHGKLSITASSSHAMGPGDRVTTPAGAQKGSVFAKDTRNPVQASDPSAEDKRGQ 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02891 460 SMART tify_2 282 312 IPR010399 -
Vimu10g02891 460 MobiDBLite consensus disorder prediction 42 64 - -
Vimu10g02891 460 ProSiteProfiles Tify domain profile. 282 317 IPR010399 -
Vimu10g02891 460 MobiDBLite consensus disorder prediction 35 64 - -
Vimu10g02891 460 MobiDBLite consensus disorder prediction 415 460 - -
Vimu10g02891 460 Pfam tify domain 284 308 IPR010399 -
Vimu10g02891 460 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 90 408 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02891 Vimu-Chr10 40064194 40071342 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02891 23 308 Tify Gene Family AT4G32570 40.594 4.75e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu10g02891 tify 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02891 - - gmx:100819293 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02551 1 36926314 36930445 Vimu10g02891 10 40064194 40071342 PCT