Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02888 ATGAAATTAGATGAAGAACGTCCAATCCGTATCACCAGAGCAAAGACTAGAGCTTTGAGAGGAATTCCTCCTCCCCCCTCAAGACCTTCCTCTGGAAATGAACAGAAAAACATGTCTAGAGCAAATTCCAAAAGAGCAGCCGCTTCTGGAGATCAAACTTCTGTGGTTGTTCCTGCTCTTATCCAAAATAAGAGAAGGGCAGTTCTGACAGATGTAACAAATATACGTGATAAGTGTACTGATGCATCAAAATTTACGGCCAAAGGAGTTTATACAAAGAAAAGCACAAAACTAGCTTCAGGCATTACGTCTGAATTCTCATCAACACAAGAGAATGTTAGAGCAAAGTTAGTTGAAGATTTATCGACAATAAGGATGGTAGAATCCGATGACTCCATAAGTGAACGTGTTATACCAGGCACCAAGCCGTCAATGCAAGATTCTGTGAAGTCCGATGAAGTTCAGAGCTCTACAAAAAATGATGTAGATGTTTCTGAGGAATACAGATTGGTTCCAGATGCCCTTTACCTGACAGTGAACCTCATTGATCGGTATCTCTCAACTAAATTCATTCAGAAGCAAAGGCTACAGTTGCTGGGTGTTACTAGCATGCTAATTGCATCGTAA 627 0.4067 MKLDEERPIRITRAKTRALRGIPPPPSRPSSGNEQKNMSRANSKRAAASGDQTSVVVPALIQNKRRAVLTDVTNIRDKCTDASKFTAKGVYTKKSTKLASGITSEFSSTQENVRAKLVEDLSTIRMVESDDSISERVIPGTKPSMQDSVKSDEVQSSTKNDVDVSEEYRLVPDALYLTVNLIDRYLSTKFIQKQRLQLLGVTSMLIAS 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02888 208 Gene3D - 162 208 - -
Vimu10g02888 208 SUPERFAMILY Cyclin-like 163 208 IPR036915 -
Vimu10g02888 208 PIRSF Cyclin_A_B_D_E 25 163 IPR046965 GO:0016538|GO:0044772
Vimu10g02888 208 PIRSF Cyclin_A_B_D_E 161 208 IPR046965 GO:0016538|GO:0044772
Vimu10g02888 208 PANTHER CYCLINS 160 208 IPR039361 -
Vimu10g02888 208 MobiDBLite consensus disorder prediction 31 51 - -
Vimu10g02888 208 MobiDBLite consensus disorder prediction 139 153 - -
Vimu10g02888 208 MobiDBLite consensus disorder prediction 136 159 - -
Vimu10g02888 208 MobiDBLite consensus disorder prediction 1 51 - -
Vimu10g02888 208 Pfam Cyclin, N-terminal domain 162 208 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02888 Vimu-Chr10 40041441 40050212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02888 9 208 Core Cell Cycle Gene Families AT5G25380 33.333 7.40e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02888 K06627 - gmx:100807750 184.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02888 10 40041441 40050212 Vimu10g02888 10 40041441 40050212 ECH
Vimu1g02548 1 36880822 36886292 Vimu10g02888 10 40041441 40050212 PCT