Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02885 ATGTCACCTCGCATATTCAATCAACCCTCCAAGCAAGTTTCAAACTTTGGTGGACGAAGGCGAGATATTCAAGTTTTTTTTGTGGAAAAAGAAAACATGGGTGTGGATTACTATGATGTGTTGAAGGTTAACAGAAATGCTACGGAGGATGATGTCAAGAAATCATACAGAAAGTTGGCCATGAAATGGCACCCTGATAAGAATCCCAACAACAAAAAGGAAGCTGAAGCCAATTTCAAACAGATTTCAGAGGCTTACGAGGCAAGAAACCTTTCATGCTGTGTTCTTTTTTATGTGCTGAGTGACCCTCAAAGAAGGTTGGTTTATGATCAGTATGGAGAGGAGGGATTGAAAGATAAGCCACCGGACGAACCATCAAATGGGTTCAACCCCAGAAATGCAGAGGATATTTTTGCAGAATTCTTTGGAAGTAGCCCTTTTGGATTTGGATCATCTGGGCCAGGGAAGTCTAAGAGATTCCCCTCTGATGGAGGGACTACAACATTTGGTGGATTTAGTGCAAAGGATAATAATTTTCGATCATATAGTACTGGACGGGGGAATGTGCTAAAGAAGCCACTACCTGTGGAATCCAAACTGCCTTGCTCTTTGGAGGAATTGTACACTGGCTCTACTAGGAAAATGAAGATCTCAAGGAAGACCGTTGATGCTAACGGATGGACAGTTCCGGAAACAGAGATATTGACCATTGATGTGAAGCCGGGTTGGAAGAAAGGGACAAAGATTACGTTCCCTGAGAAAGGGAATCAAGAACCAAATCAACTGCCAGCAGACCTTGTGTTTGTGATTGACGAGAAGCCTCATGATGTGTTTAAGAGAGACGGGAATGACCTTATTGTGAACAAAAGGGTATCATTGGCTGAGGCCATTGGAGGAACCACAATAAACCTCAACACGCTTGATGGAAGAAGTTTAAATGTTCAAGTCACTGACATTGTGAGTCCTGGTTACGAGATGAATGTTGCAAAAGAAGGGATGCCAATAACAAAGGAGCCTGGTCATAGGGGTGATCTCAAGATCAAATTTGATGTCAGTTTTCCTACAAAGTTGACCCCAGAGCAACGAGCAGGACTCAAGCGAGCACTCACAAGTTGA 1116 0.4301 MSPRIFNQPSKQVSNFGGRRRDIQVFFVEKENMGVDYYDVLKVNRNATEDDVKKSYRKLAMKWHPDKNPNNKKEAEANFKQISEAYEARNLSCCVLFYVLSDPQRRLVYDQYGEEGLKDKPPDEPSNGFNPRNAEDIFAEFFGSSPFGFGSSGPGKSKRFPSDGGTTTFGGFSAKDNNFRSYSTGRGNVLKKPLPVESKLPCSLEELYTGSTRKMKISRKTVDANGWTVPETEILTIDVKPGWKKGTKITFPEKGNQEPNQLPADLVFVIDEKPHDVFKRDGNDLIVNKRVSLAEAIGGTTINLNTLDGRSLNVQVTDIVSPGYEMNVAKEGMPITKEPGHRGDLKIKFDVSFPTKLTPEQRAGLKRALTS 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02885 371 Pfam DnaJ C terminal domain 196 354 IPR002939 -
Vimu10g02885 371 CDD DnaJ_C 196 357 - -
Vimu10g02885 371 SUPERFAMILY HSP40/DnaJ peptide-binding domain 196 276 IPR008971 GO:0006457|GO:0051082
Vimu10g02885 371 Gene3D DnaJ domain 34 152 IPR036869 -
Vimu10g02885 371 SMART dnaj_3 35 105 IPR001623 -
Vimu10g02885 371 FunFam Dnaj homolog subfamily b member 192 273 - -
Vimu10g02885 371 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 33 369 - -
Vimu10g02885 371 Pfam DnaJ domain 36 110 IPR001623 -
Vimu10g02885 371 SUPERFAMILY Chaperone J-domain 35 151 IPR036869 -
Vimu10g02885 371 PRINTS DnaJ domain signature 74 94 IPR001623 -
Vimu10g02885 371 PRINTS DnaJ domain signature 56 71 IPR001623 -
Vimu10g02885 371 PRINTS DnaJ domain signature 38 56 IPR001623 -
Vimu10g02885 371 PRINTS DnaJ domain signature 105 124 IPR001623 -
Vimu10g02885 371 CDD DnaJ 36 102 IPR001623 -
Vimu10g02885 371 Gene3D - 274 371 - -
Vimu10g02885 371 SUPERFAMILY HSP40/DnaJ peptide-binding domain 277 363 IPR008971 GO:0006457|GO:0051082
Vimu10g02885 371 ProSiteProfiles dnaJ domain profile. 36 113 IPR001623 -
Vimu10g02885 371 FunFam DNAJ heat shock family protein 274 369 - -
Vimu10g02885 371 Gene3D - 195 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02885 Vimu-Chr10 40021245 40023138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02885 37 112 C2H2 Transcription Factor Family AT1G74250 35.000 8.26e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02885 K09510 - gmx:100796426 492.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02885 10 40021245 40023138 Vimu10g02885 10 40021245 40023138 ECH