Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02878 ATGCACTCCAAATCGGCGCAGTCATCGTTTCGGGATCGGACGCTTGAATTTCATAGCATTGCGGAGAGGTTGAAGAAGTCGGGAACAGCGCCGAATGGACAAAGCAGCAATTTATTGGAGGAGCAGCGATCCGCAATTACAAATCAATCAGAGTTCAACAGAAGAGCTTCCAAGATTGGCTTCGGGATTCACCAAACGTCTCAGAAGCTCGCCAAGCTTGCCAAGTTGGCTAAGAGGACCTCGGTTTTCGATGACCCTACCATGGAAATCCAAGAGCTTACGGGGGTAATTAAGCAAGATATCACTGCGTTAAACTCTGCGGTTGTGGATCTTCAATTGCTTTGCAATTCAAGGAACACGAGTGGGAACGCTTCCACCGACACCACTATGCATTCAACAACGGTGGTTGATGACCTCAAGACGCGGCTGATGGGCGCCACTAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGGGCACGAGAATAGAAGACAGCTGTTTTCGGCCTCTGGTTCTAAGGATTCTGCAAATCCTTTTGTCCGGCAACGGCCGTTGGCCACCAGATCGGCTGCTAGTAGTTCTAATGCCCCTGCTCCACCATGGGCTAGTGGGTCATCTTCATCTCAGTTGTTTGCTAAGTAA 654 0.4893 MHSKSAQSSFRDRTLEFHSIAERLKKSGTAPNGQSSNLLEEQRSAITNQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLCNSRNTSGNASTDTTMHSTTVVDDLKTRLMGATKEFKDVLTMRTENLKGHENRRQLFSASGSKDSANPFVRQRPLATRSAASSSNAPAPPWASGSSSSQLFAK 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02878 217 Gene3D - 44 201 - -
Vimu10g02878 217 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 26 IPR021538 -
Vimu10g02878 217 MobiDBLite consensus disorder prediction 167 181 - -
Vimu10g02878 217 MobiDBLite consensus disorder prediction 190 217 - -
Vimu10g02878 217 SUPERFAMILY t-snare proteins 49 179 IPR010989 GO:0016020|GO:0016192
Vimu10g02878 217 MobiDBLite consensus disorder prediction 164 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02878 Vimu-Chr10 39970252 39971070 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02878 1 208 SNARE and Associated Proteins AT3G24350 57.576 6.01e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02878 K08490 - gmx:100810956 342.043