Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02877 ATGCAAACAAACCACTATCCACTACACCAATTTTCCAGATCCCCTTGTCTTCCCCAACGAATTGCAACATATGATTCATTAACATACACACAATCACCGAAATTTTTTTCCAAATCCAAATTCAATTTGAGCTTTTCCCCGTGTTGTTCACGTGTGCCTGATTACTTTCGCGGATCTCAGATTCTCGGAGGCAACCATTGCATTGAATTTCCAAGACGGGAAAAGAAAATGTACGTGAAAGCGGCACAGTCATCGTTCCGGGATCGGACGCATGAATTCCACAACATCACTGAGAGGTTGAAGAAGTCCGGATCAGGGCCCACTGGGCCCAGCAGTAGCAGTCATTCCAGATCGGAGGAACAGCGATCGGCGATCGCAAATCAATCGGATTTCAATAGAAGGGCCTCCAAAATTGGCTTCGGAATTCACCAAACGTCTCAGAAGTTAGCCAAGCTCGCCAAGTGTAAGCAAATGACGATACGTTTAGTTTAA 492 0.4533 MQTNHYPLHQFSRSPCLPQRIATYDSLTYTQSPKFFSKSKFNLSFSPCCSRVPDYFRGSQILGGNHCIEFPRREKKMYVKAAQSSFRDRTHEFHNITERLKKSGSGPTGPSSSSHSRSEEQRSAIANQSDFNRRASKIGFGIHQTSQKLAKLAKCKQMTIRLV 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02877 163 MobiDBLite consensus disorder prediction 98 128 - -
Vimu10g02877 163 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 82 102 IPR021538 -
Vimu10g02877 163 MobiDBLite consensus disorder prediction 101 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02877 Vimu-Chr10 39965647 39966138 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02877 77 161 SNARE and Associated Proteins AT3G24350 42.391 1.11e-14 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02877 K08490 - gmx:100778493 113.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02877 10 39965647 39966138 Vimu10g02877 10 39965647 39966138 ECH