Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02872 ATGGGAGTGGTGGCAGTATTGCACGCTGAGTCTCTGCAGCTTGACTGCAAGGACACGAAGCATGTGACTGAGAAAGACGTGTATAATCATCTACCATCAAACGAAGAGCACCTGCTTGGAGAAGAATCAAGTCAATCAACAGATCACCAAAAGATCAATACTATGCGTGAGAGAGGATATATGGAATATGGATGTCAACATTACCGGAGAAGATGCCGTATTAGGGCCCCCTGTTGCAATGAGATTTTTAATTGTCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGATCAGAAGCACAGACACGATATTCCCCGCCATCAAGTTAAACAGGTTATATGTTCACTTTGTGAGACCGAACAAGAGGTGAGTTTAGATTTTCTTGCTATCTTTCAGTGTAATCTTCCACAATGTTTTTCTTGTGTCAATATATGTTGCTTCCAGGTTCAGCAAAACTGTATTAACTGTGGTGTTTGTATGGGCAAGTACTTCTGTGGGACGTGCAAGCTCTTCGATGATGATGTATCGAAGAAGCAATATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATGTCTTCCACTGCTACAAATGTGGTTGTTGCTATCCAACTCAGATGAAAAACAGTCACCCTTGTGTGGAAGGAGCAATGCATCACGATTGCCCCATTTGTTTCGAGTATTTGTTTGAATCTGTGAATGATGTCCTTGTTTTGCCCTGTGGACATACAATACATAAGAGCTGCCTGAATGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTCGAAGTCAGTTTGTGACATGTCAATGATTTGGGAGAAGCTTGACATGGAGATTGCTGCTACACCAATGCCTGAAGCATATCGAAACAAAATGATTTGGATCCTTTGCAATGATTGTACTAAAACTTCTCACGTCCAATACCATCTTGTTGCCCAAAAGTGCTTGAACTGCAAATCCTACAACACACGGCAAATAAGAGGCTGA 1011 0.4184 MGVVAVLHAESLQLDCKDTKHVTEKDVYNHLPSNEEHLLGEESSQSTDHQKINTMRERGYMEYGCQHYRRRCRIRAPCCNEIFNCRHCHNEAKNNINIDQKHRHDIPRHQVKQVICSLCETEQEVSLDFLAIFQCNLPQCFSCVNICCFQVQQNCINCGVCMGKYFCGTCKLFDDDVSKKQYHCSGCGICRTGGCENVFHCYKCGCCYPTQMKNSHPCVEGAMHHDCPICFEYLFESVNDVLVLPCGHTIHKSCLNEMREHFQYACPLCSKSVCDMSMIWEKLDMEIAATPMPEAYRNKMIWILCNDCTKTSHVQYHLVAQKCLNCKSYNTRQIRG 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02872 336 Gene3D - 298 336 - -
Vimu10g02872 336 ProSiteProfiles Zinc finger CHY-type profile. 58 137 IPR008913 GO:0008270
Vimu10g02872 336 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 41 335 - -
Vimu10g02872 336 SMART ring_2 227 269 IPR001841 -
Vimu10g02872 336 Pfam Ring finger domain 226 269 IPR001841 -
Vimu10g02872 336 SUPERFAMILY RING/U-box 225 273 - -
Vimu10g02872 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 272 IPR013083 -
Vimu10g02872 336 Pfam Zinc-ribbon 274 332 IPR039512 -
Vimu10g02872 336 ProSiteProfiles Zinc finger RING-type profile. 227 270 IPR001841 -
Vimu10g02872 336 ProSiteProfiles Zinc finger CTCHY-type profile. 162 226 IPR017921 -
Vimu10g02872 336 SUPERFAMILY Zinc hairpin stack 163 220 IPR037275 -
Vimu10g02872 336 Pfam CHY zinc finger 65 126 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02872 Vimu-Chr10 39916774 39921517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02872 63 336 C2H2 Transcription Factor Family AT3G18290 36.823 9.28e-51 179
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02872 10 39916774 39921517 Vimu10g02872 10 39916774 39921517 ECH