Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02869 ATGTCGATGTCGTCTAAAGCGAGAAGAAGATGCTCAAGCAGCGAAATGGCCTCTGTTTCAAGTACCATCTTTCCAGCATTTGGCACCCCCATCTTTGTTGTAGAAGGTTACTCCAACCTAAGAAAACACGTCATTGCTCCCTATGACCCTATATATCAATTGTGGCAAACGTTCGTAGTGGCTTTGGTAGTGTACTCTGCATGGGCATCTCCATTCGAGCTAGCTTTCAGAGATCTGTTAGTTGGGTCATATTTGACCGTTGTTGATCTCCTTGTTGATGCCTTCTTTGCAATTGATATAATCCTTACTTTCTTTGTGGCTTACTTCGATACATCAACTTATCTCCTCGTCGACGATCATAAGAAGATTGCTCTCAGGTACGTCAAAAAGTTGCACTTCACCATGGATCTAGCCTCCACTCTGCCAATTGAGAAGATATATCAAATTCTGACGGGCAAGCCAACCAGAAGCGTGGTATTTGGTTTCCTAATTATGCTAAGACTCTGGAGATTGAGGCGTGTTAGCGAACTCTTCGCGAGGCTAGAGAAAGACATACGAATCAATTATTCTGCAACAAGATTTTGCAAACTTATATGTGTTACACTATTTGTAGCACACTTCGCAGGCTGCATGTTTTTTTGGTTGGGTGTCCAGCACAAGACACCGAAACACACATGGCTCGGGAACAAAACACAGGATTTTCATGAATTGGGAGTGGGGTTGGGTTACACTTATTCTGTGTACTGGTCTGTTGCAACCCTTACCACCGTTGGATATGGAGATTTTTATGCAGTAAATTTAACGGAGATGCTTTTCTGCATTTTTTACATGCTCTTTAACATCGGCCTCGGTGCATATATTATTGGAAACATGACAACTCTGTTGGTTCATAGCTCTGTCGGAACCTTTGCCGTGGCTTCACAGAGGGATGTCTTAAACAAAATATTACAGTATGCAAACAAAAATAGACTCCCGGGACGATTAAAGGAGCAAATATTGGCACACATGCAATTGAAATTTAAGACTGCAGAGTTACAGCAAGAAGTGTTACAAGACCTACCTAAAACTATAAGATCCAGTATTGCTCAGCATCTTTTCAAAAACATTGTTGAAACAGCATATTTATTCAAAGGAGTTTCTGATTATTTTATCACCCAGCTGGTGTCAGAAACGGAGGCACAATACTACCCATCTAAGGTTGACATTATCTTGCAAAATGAGATGCCAAAATATTTCTACATCTTGGTATCTGGGTCACTGGATGTGTTGATATACAATACTGGGTCTGAACAGTTTTTATTCGAACTAGAATCTGGAGACATGGCAGGAGAAATAGGCGTGATGTTTAATATTCCACAACCTTTTACAGTAAGAAGTAGAGGGCTCTCCCAGGTCATACGAATCAATCATCATCACTTCAAGCAGATGGTGCAACCATTTAGTGACGATGGGAAGGCAATCATGTACAATTTCTTTCAGCATTTGAAGGGCCTCAAAAGCAAGGTGCTAGAAGAAATATCGTATGTAACAGAATTGCTGGGTTACCTTGAGCATCTGAGACAAAATGAGGGTTCACTTCATGAAGTTTCAAGATATCAAGATCCATATAAAGAAGGAAAAACAGGAAATTCCAAACCACTGAGAAGCCCAGTCCCCGTTAGAGTTACAATCCACGGACACCATCCCAATGAAAACAAAACGGGAAATGGATCAACGCCAAAGCTCATACTTCTCCCAAATTCGATAGAAGATGTTTTCAGAGTTGCAGAGAGAAAATTCGGAAAAAGAGGAAGCAAAATTCTCATGGCTGACGGCACAGAAGTAGAACAATTAAACGCGATAAGGGAGAATGATGAGTTGTATATCCTCTAA 1872 0.4092 MSMSSKARRRCSSSEMASVSSTIFPAFGTPIFVVEGYSNLRKHVIAPYDPIYQLWQTFVVALVVYSAWASPFELAFRDLLVGSYLTVVDLLVDAFFAIDIILTFFVAYFDTSTYLLVDDHKKIALRYVKKLHFTMDLASTLPIEKIYQILTGKPTRSVVFGFLIMLRLWRLRRVSELFARLEKDIRINYSATRFCKLICVTLFVAHFAGCMFFWLGVQHKTPKHTWLGNKTQDFHELGVGLGYTYSVYWSVATLTTVGYGDFYAVNLTEMLFCIFYMLFNIGLGAYIIGNMTTLLVHSSVGTFAVASQRDVLNKILQYANKNRLPGRLKEQILAHMQLKFKTAELQQEVLQDLPKTIRSSIAQHLFKNIVETAYLFKGVSDYFITQLVSETEAQYYPSKVDIILQNEMPKYFYILVSGSLDVLIYNTGSEQFLFELESGDMAGEIGVMFNIPQPFTVRSRGLSQVIRINHHHFKQMVQPFSDDGKAIMYNFFQHLKGLKSKVLEEISYVTELLGYLEHLRQNEGSLHEVSRYQDPYKEGKTGNSKPLRSPVPVRVTIHGHHPNENKTGNGSTPKLILLPNSIEDVFRVAERKFGKRGSKILMADGTEVEQLNAIRENDELYIL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02869 623 FunFam Potassium channel KAT2 363 499 - -
Vimu10g02869 623 Gene3D - 53 297 - -
Vimu10g02869 623 PANTHER POTASSIUM CHANNEL AKT1 15 505 IPR045319 GO:0005249|GO:0006813
Vimu10g02869 623 Pfam KHA, dimerisation domain of potassium ion channel 554 622 IPR021789 -
Vimu10g02869 623 CDD CAP_ED 375 488 IPR000595 -
Vimu10g02869 623 SUPERFAMILY cAMP-binding domain-like 309 495 IPR018490 -
Vimu10g02869 623 Gene3D Jelly Rolls 343 500 IPR014710 -
Vimu10g02869 623 ProSiteProfiles cAMP/cGMP binding motif profile. 375 494 IPR000595 -
Vimu10g02869 623 FunFam Potassium channel KAT3 54 297 - -
Vimu10g02869 623 SUPERFAMILY Voltage-gated potassium channels 47 296 - -
Vimu10g02869 623 SMART cnmp_10 375 492 IPR000595 -
Vimu10g02869 623 ProSiteProfiles KHA domain profile. 554 623 IPR021789 -
Vimu10g02869 623 PRINTS EAG/ELK/ERG potassium channel family signature 287 296 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu10g02869 623 PRINTS EAG/ELK/ERG potassium channel family signature 100 109 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu10g02869 623 PRINTS EAG/ELK/ERG potassium channel family signature 243 260 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu10g02869 623 PRINTS EAG/ELK/ERG potassium channel family signature 89 99 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu10g02869 623 PRINTS EAG/ELK/ERG potassium channel family signature 269 280 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu10g02869 623 Pfam Cyclic nucleotide-binding domain 395 478 IPR000595 -
Vimu10g02869 623 Pfam Ion transport protein 53 294 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02869 Vimu-Chr10 39888938 39895320 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02869 8 622 Ion Channels AT4G32650 53.797 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02869 K21867 - gmx:100794620 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02869 10 39888938 39895320 Vimu10g02869 10 39888938 39895320 ECH