Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02854 ATGGAGGATCAAGCGAATCAAGCGCCACCGCAGCACGATGAAGAGGAGGATTCTAAGAAGGAAGAAGATGAATTGGTTACGAAGGTTAACAAACTCATGGAGAAGATCACTTCTGCGCCTGATAACCCTAACGCCACCGTTCTCCACGCTCTTGCCTCTATTCTCGAAACACAAGAGTCAAGATACATGGATGAGAATGACCACTCTTCCTCCAGTACTGCCCGTGCTGCGCATGTCATTGGTCGTCTTGGCGGTTTAATTCGGGAAAATGATGAGTTTTTTGAGTTAATATCTTCAAAGTTTCTGTCAGAAACAAGATACTCAACTTCTGTTCAAGCTGCTGCTGGAAGACTTCTCCTATGCTGTTCACTAACATGGATTTATCCTCATGTTTTTGAAGAACCGGTCATGGAAAGCATAAAAAATTGGGTGATGGATGATAACACTGGGCTGTCTTCTGAAGAGCAGAATCTGAAGCATAGTTCTGGGAGAAGGGAGGCATCAGACTCTGAAATGTTGAAAACCTACTCTACTGGACTTCTTGCTGTTTGTTTGGTTGGTGGAGGTCAAATTGTTGAAGATGTATTGACATCTGGGTTGTCAGCTAAGCTTATGCGATATCTTCGTTTATGCGTTCTGGGAGAGACAAGTAGCAACCAGAAAGATGTTACTCATATGACAGAGAGTAGGCATGCATCTGCGAATACCTCAGGGAGAGCTAGAGATGATGGTCGTGGCAGATTTCGCCAGCTCCTTGAACCAAATCATCTGGATGATACTAGGATTATTGATGAGAGATCCTTAGATGATGTAAGTCTTGAAAGGGCTCCAGATAGAAGCATTAGTGGACAAACACATCAAGAAGGGTCTTGGATAGAAGGTGAACCACCTGATGGGCTTGGTGAAGGTGTTGATGTCCAGGAGGTAGATTCTGATGGGGAAGATAGATGGCGTTACAGAGATATACGTGATGGAAGGATAAAATACAGTGAGCATGATGACAATGTTAGAGATGACTCTTCAAGGCGGCGTTCAAACCGTGGATGGGGAAGATCTAAAGGGAAAGGAAGGGTCACTGAAGGCACTGTAGAGAGTGATTCCATTTTATCATCTCCTGGTTCTGGTAGTAGATTAGCACAGGGTCGGAGAGATAGAAGTGTAATGAGGAATGCTGATGTTAGGAGGGTGGCTGAGTCTAAGAAGACCCTTGGCAGGACCTCTTTGGAGTCTTCTGGTTTTGAAAGAGATGATCACGATGATTGTTTCCATGAATGCCGAATTGGAAATAAAGATATAACTGATCTTGTCCGGAAAGCAGTTCGAGCTGCTGAAGCTGAGGCTAGATCAGCCAATGCACCCGAAGAAGCTGTCAAAGCAGCTGGTGATGCTGCTGCTGACCTGGTTAAAACTGCAGCTTCAGAGGAATATAAATCCTCTGATAATGAAGAAGCAGCTTTTTTGGCTGCTTCTAAAGCTGCATCAACTGTTATTGATGCTGCAACTGCAGTTGAAGTTTCAAGGAGTTCTATTGCCAACAATACTGTAACAGAGAACGAGAGTGGCAAAGAAGCAGAAACTAATGAGGATGTGGAAGAGTACTTCATCCCAGATACTCAATCACTTGCACAGTTGAGGGAAAAATATTGCATTCAGTGTCTTGAGTTACTTGGAGAATATGTAGAAGTGCTTGGCCCTGTGTTGCACGAGAAGGGAGTTGATGTGTGTCTTGCACTTCTGCAGCAGAATTCTAAACATCGGGAGCCATCCAAGGTTGCTTTGCTGTTACCCGATGTCATGAAGCTAATATGTGCTTTGGCTGCACATAGGAAATTTGCTTCACTTTTTGTGGACCGAGGGGGAATGCAAAAGCTTCTTGCTGTCCCTAGAATGGCACAGACTTTCTTTGGTCTTTCTTCTTGTCTATTCACTATTGGCTCTCTTCAGGGTATAATGGAAAGGGTTTGTGCTCTTCAATCACAAGCTCTTCCATCACAAGTTGTTTATTACGTTGTTGAGTTAGCTCTACAACTTTTTGACTGCAATCAAGATCAAGCCCGCAAGAATGCAGCATTGTTTTTTGCTGCTTCGTTTGTCTTCAGAGCTGTTCTTGACGCCTTTGATTCCCTAGATGGATTGCAGAAATTGCTGGGCCTTCTAAATGATGCTGCTTCTGTAAGATCAGGAATAAATTCTGGAGCCTTGAGTTTATCTAACTCAGGATCACTTCGAAATGAACGATCATCTGCGGAAGTGCTGACATCATCTGAGAAGCAGATAGCCTATCACACTTGTGTTGCTTTGAGGCAATATTTCAGGGCCCATCTCCTTGTGTTAGTGGACTCCATTCGTCCTAACAAGAGCAATCGTAGTGCTGCTAGAAATATACCAAGTGTAAGGGTGTACAAGCCCCTTGATATTAGTAATGAGGCAATGGATGGAGTATTCCTACAATTACAAAAGGACCGGAAGCTAGGTCCTGCATTTGTTAGAACACGTTGGCTAGCTGTTGAGAAGTTCTTGGCATCTAATGGACATGTTACCATGTTGGAGTTATGTCAGGCCCCACCTGTGGAAAGATATCTGCATGATCTGCTTCAGTATGCTTTGGGTGTTCTGCACATTGTTACATTGGTACCTAGCAGTCGTAAGATGATCGTGAATGTAACTTTAAGCAACAATCGTGTTGGTATTGCGGTAATTTTGGATGCTGCAAATGTAGCTAGTAGTCATGTGGACCCAGAGATAATTCATCCAGCACTAAATGTTTTAGTCAATCTTGTTTGCCCTCCTCCTTCAATAAGCAATAAACCGGCTATGGTTGCACAAGGTCAGCAGTTGCCATCCTCCCAGACATCTAATGGTCCTCCCTCAGAGGCTAGAGATAGAAATGCTGAACGAAGTGTTTCAGATCGAGGTGTTCACTCTACTAGCCAGATTGATCCTAGGGAGAGGAATGGGGAGTCCAATGCTATAGATCGAGGCAGTGCTGCAAGCTTAAGTACACAGGCTGTTGGTAGTACTCCACAAACTCCAGTTGCTTCTGCAACTTTTGGACTGGTTGGCGACCGAAGAATATCTCTGGGTGCGGGAGCAGGTTGTGCAGGCCTTGCTGCACAATTGGAACAAGGATATCGTCAGGCGAGAGAGACTGTCAGATCTAATAATGGTATAAAGGTTCTTCTGCATCTCCTCCAACCACGGATATATTCACCTCCTGCTGCACAGGACTGTCTTCGGGCTCTAGCATGTCGAGTCCTGCTTGGATTAGCCAGAGATGATACAATTGCACACATATTGACAAAGCTTCAGGTTGGGAAAAAGCTGTCAGAACTGATTCGGGATTCTGGTAGCCAAACTCCTGGAACGGAGCAGGGTAGGTGGCAAGCTGAACTTTCCCAGGCTGCCATTGAGCTTATTGGGATTGTGACTAATTCAGGCCGTGCAAGTACATTAGCTGCTACTGATGCAGCTACTCCTACATTAAGGCGCATAGAAAGAGCAGCTATTGCTGCTGCTACTCCTATTACTTACCATTCAAGGGAACTTTTGCTTCTAATTCATGAACACCTACAGGCATCTGGATTGGCACAAACTGCTTCTGTGTTGCTTAAAGAGGCACAGTTTACTCCTTTGCCATCATTGGTTCCTCCCTTTTCTCTTGCACAACAGCCCACAACACAGGAAGCTTCTTCAACACAAATTCAGTGGCCCTCTGGTCGTACTCCTTCTGGATTTCTCTCTAACAAATTAAAGTTTAATGCAAAGGATGAGGATGCCGTCTTGAAAAGTGAATCTGTCTCTGCAAAGAAAAAATCACTAACTTTCTCATCATCTTTTCATTCAAGACTCCAACTTCTTGACTCTCAACAATCATCTGTGAGGAAATTGTCAAATACTTCTAAAGAATCTTTAGAAACTAGTTTAGTAGAGACTGGATCGGAATCTTCAGTGAAACATAACATTGATAATGGATCTCAGTTTAAGACTCCAGTAGCTTTGCCAGCAAAACGGAAGTTATCTGATTTGAAGGACATATCAATGTTTTCTTCATCTGGAAAACGATTAAATGTTGGGGATCAAGGACTCCGCTCTCCTGTATGTTCAAGTGCAATTCGTAAAAGCAGCCTGCAACCTGATGCGGTTGGACTTTTCACCCCAACTTGTAACGTGAAAAATCAACATAGCCGTTGTATGGGTGACTTGGTGGACGAGAATCAGTGCAGTATATCAAATCTATGTCAGACGACACCATCCTCCCAAGTTTTAAGCGACCTTCAGCCCAGCAACCCTGAGCGTGTAACATTAGATTCTCTAGTGGTTCAGTATTTGAAGCATCAACATCGCCAGTGTCCAGCTCCTATTACAACACTTCCTCCACTGTCACTTCTGCACCCACATGTCTGTCCTGAACCAAAGCGAAGCCTTGACGCACCTTCTAATGTGACCGCTAGGCTTGGTACACGGGAGTTTAAATATATGTATGGTGGAGTACATGGGAATCGCAGGGATCGTCAATTTGTTTACAGTCGATTTAGGCCTTGGCGCACATGTCGGGATGATGCTGGTGCCTTGTTAACATGCATTACATTTGTTGGGGACTCCTCTCATATTGCTGTTGGAAGCCATAATGGGGAGCTCAAATTTTTTGAATCCAACAACAGCAATGTAGTAGAGAGTTTCACAGGTCATCAGGCTCCTTTGACTCTTGTTCAGTCTTTTGTTTCAGGCGAGACCCAGCTATTACTTTCTTCAAGCTCCCAAGATGTTAGATTGTGGGACGCAACTTCAATTTTAGGTGGTCCTACCCATTCATTTGAAGGATGCAGGGCAGCCAGGTTTAGCAATTCTGGGAATGTTTTTGCCGCCCTGTCATCAGAATCTTCCCGGCGGGAGATCCTCTTGTATGATATTCAAACATGTCACTTAGAGTCGAAGTTGACAGATACATTTGCAACTTCTACAGGGCGTGGTCACGTTTATTCTTTAATCCATTTTAATCCTTCTGACTCAATGCTGCTTTGGAATGGTGTCTTGTGGGATCGACGTGTCTCTGGTCCTGTTCATCGCTTTGATCAGTTTACAGATTATGGTGGTGGAGGCTTTCATCCTGCTGGCAACGAGGTTATTATAAACTCTGAAGTCTGGGATCTGCGCAAGTTCAGATTGCTACGCAGTGTGCCTTCATTGGATCAAACATCAATAACATTCAATGCGCGTGGTGATGTAATGTATGCTATCTTAAGGAGAAATCTTGAGGATGTAATGTCAGCAGTCCACACACGACGCGTCAAGCATCCTCTTTTTTCAGCTTTCCGCACAGTGGATGCAGTTAATTATTCTGACATTGCAACTATCCCTGTGGATCGCTGTGTTCTTGATTTTGCAACTGAGCCTACAGACTCATTTGTTGGGCTGATTACCATGGATGATCAGGATGAGATGTATGCTTCTGCCAGAATATATGAAATTGGTCGTCGGAGGCCAACGGATGATGATTCTGATCCTGATGATGCTGAAAGTGAGGAGGAAGATGAGGATGACGACGACGACGACGGTGATGTTGATCCTCTTTTAGGTCCTGGTCTTGGTGGGGATAGTGGCAGTGATGCTGATGATATGAGCAATGATGACGACGAGGATGATAGTGTGAGTGATCTTGATGAAGATGAGGATGGAGATTTTATTTTGGATGATGTAGACTTTGACGGTGGACCTGGCATATTGGAGATTGTGACAGAAGGTGACGAAGATGATGATGACAGTCAGGTACTTGAATCCTTAAGTAGTGATGATGAGGATTTTGTGGGTAATGGCTTTGGGTATTAA 5826 0.4415 MEDQANQAPPQHDEEEDSKKEEDELVTKVNKLMEKITSAPDNPNATVLHALASILETQESRYMDENDHSSSSTARAAHVIGRLGGLIRENDEFFELISSKFLSETRYSTSVQAAAGRLLLCCSLTWIYPHVFEEPVMESIKNWVMDDNTGLSSEEQNLKHSSGRREASDSEMLKTYSTGLLAVCLVGGGQIVEDVLTSGLSAKLMRYLRLCVLGETSSNQKDVTHMTESRHASANTSGRARDDGRGRFRQLLEPNHLDDTRIIDERSLDDVSLERAPDRSISGQTHQEGSWIEGEPPDGLGEGVDVQEVDSDGEDRWRYRDIRDGRIKYSEHDDNVRDDSSRRRSNRGWGRSKGKGRVTEGTVESDSILSSPGSGSRLAQGRRDRSVMRNADVRRVAESKKTLGRTSLESSGFERDDHDDCFHECRIGNKDITDLVRKAVRAAEAEARSANAPEEAVKAAGDAAADLVKTAASEEYKSSDNEEAAFLAASKAASTVIDAATAVEVSRSSIANNTVTENESGKEAETNEDVEEYFIPDTQSLAQLREKYCIQCLELLGEYVEVLGPVLHEKGVDVCLALLQQNSKHREPSKVALLLPDVMKLICALAAHRKFASLFVDRGGMQKLLAVPRMAQTFFGLSSCLFTIGSLQGIMERVCALQSQALPSQVVYYVVELALQLFDCNQDQARKNAALFFAASFVFRAVLDAFDSLDGLQKLLGLLNDAASVRSGINSGALSLSNSGSLRNERSSAEVLTSSEKQIAYHTCVALRQYFRAHLLVLVDSIRPNKSNRSAARNIPSVRVYKPLDISNEAMDGVFLQLQKDRKLGPAFVRTRWLAVEKFLASNGHVTMLELCQAPPVERYLHDLLQYALGVLHIVTLVPSSRKMIVNVTLSNNRVGIAVILDAANVASSHVDPEIIHPALNVLVNLVCPPPSISNKPAMVAQGQQLPSSQTSNGPPSEARDRNAERSVSDRGVHSTSQIDPRERNGESNAIDRGSAASLSTQAVGSTPQTPVASATFGLVGDRRISLGAGAGCAGLAAQLEQGYRQARETVRSNNGIKVLLHLLQPRIYSPPAAQDCLRALACRVLLGLARDDTIAHILTKLQVGKKLSELIRDSGSQTPGTEQGRWQAELSQAAIELIGIVTNSGRASTLAATDAATPTLRRIERAAIAAATPITYHSRELLLLIHEHLQASGLAQTASVLLKEAQFTPLPSLVPPFSLAQQPTTQEASSTQIQWPSGRTPSGFLSNKLKFNAKDEDAVLKSESVSAKKKSLTFSSSFHSRLQLLDSQQSSVRKLSNTSKESLETSLVETGSESSVKHNIDNGSQFKTPVALPAKRKLSDLKDISMFSSSGKRLNVGDQGLRSPVCSSAIRKSSLQPDAVGLFTPTCNVKNQHSRCMGDLVDENQCSISNLCQTTPSSQVLSDLQPSNPERVTLDSLVVQYLKHQHRQCPAPITTLPPLSLLHPHVCPEPKRSLDAPSNVTARLGTREFKYMYGGVHGNRRDRQFVYSRFRPWRTCRDDAGALLTCITFVGDSSHIAVGSHNGELKFFESNNSNVVESFTGHQAPLTLVQSFVSGETQLLLSSSSQDVRLWDATSILGGPTHSFEGCRAARFSNSGNVFAALSSESSRREILLYDIQTCHLESKLTDTFATSTGRGHVYSLIHFNPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSITFNARGDVMYAILRRNLEDVMSAVHTRRVKHPLFSAFRTVDAVNYSDIATIPVDRCVLDFATEPTDSFVGLITMDDQDEMYASARIYEIGRRRPTDDDSDPDDAESEEEDEDDDDDDGDVDPLLGPGLGGDSGSDADDMSNDDDEDDSVSDLDEDEDGDFILDDVDFDGGPGILEIVTEGDEDDDDSQVLESLSSDDEDFVGNGFGY 1941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 1911 1927 - -
Vimu10g02854 1941 ProSiteProfiles LIS1 homology (LisH) motif profile. 1178 1210 IPR006594 GO:0005515
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 363 377 - -
Vimu10g02854 1941 FunFam DDB1-and CUL4-associated factor homolog 1 1508 1835 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 1290 1322 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 1870 1898 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 219 234 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 332 346 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 382 402 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 332 415 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 937 958 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 991 1011 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 1821 1941 - -
Vimu10g02854 1941 SMART Lish 1178 1210 IPR006594 GO:0005515
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 1 24 - -
Vimu10g02854 1941 PANTHER VPRBP PROTEIN-RELATED 15 1938 IPR033270 GO:0016567
Vimu10g02854 1941 Gene3D - 1511 1835 IPR015943 GO:0005515
Vimu10g02854 1941 SMART WD40_4 1553 1593 IPR001680 GO:0005515
Vimu10g02854 1941 SMART WD40_4 1510 1550 IPR001680 GO:0005515
Vimu10g02854 1941 SMART WD40_4 1598 1636 IPR001680 GO:0005515
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 219 245 - -
Vimu10g02854 1941 SUPERFAMILY WD40 repeat-like 1524 1746 IPR036322 GO:0005515
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 271 312 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 1834 1855 - -
Vimu10g02854 1941 MobiDBLite consensus disorder prediction 937 1011 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02854 1537 1743 U-box Gene Family AT2G33340 24.554 9.51e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02854 K11789 - gmx:100800133 3007.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02854 10 39824112 39834250 Vimu10g02854 10 39824112 39834250 ECH