Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02840 TTGCAGGAACGAATTCCGGTGGAGGAAGTGTTTGAGCAGCTGAAATGTTCAAGAGCAGGTCTAACATCGGAGGAAGGAGCCAGTCGGCTTCAAGTTTTTGGACCAAACAAATTGGAAGAGAAAAAGGAAAGCAAAGTTTTGAAGTTTTTGGGTTTCATGTGGAACCCCTTATCATGGGTTATGGAAGCTGCTGCTATAATGGCCATTGCTCTGGCCAATGGTGGAGGAAGGCCGCCGGACTGGCAAGATTTCGTTGGTATCATTGCTCTCTTGTTCATTAACTCCACCATCAGTTTCATCGAAGAAAACAATGCTGGTAATGCTGCTGCTGCACTCATGGCTGGTTTAGCTCCCAAGACCAAGGGTGATGCTCTGAGTGTTGATCAGTCTGCTTTGACAGGAGAGTCTCTCCCAGTGACAAAGAATCCCTCTGATGAAGTGTTTTCTGGATCAACCGTGAAGAAGGGTGAGATAGAAGCAGTGGTGATTGCCACTGGGGTGCACACCTTTTTTGGCAAGGCTGCTCATCTGGTTGACAGCACCAACCAAGTTGGTCACTTCCAGAAAGTCCTTACAGCAATTGGTAACTTCTGCATTTGTTCCATTGCGGTTGGAATAATCATTGAGCTCATTGTCATGTACCCAATACAACACCGCAAATACAGAGATGGGATTGACAATCTGTTGGTTCTCTTGATTGGAGGAATTCCAATTGCCATGCCAACTGTTCTGTCTGTCACTATGGCTATTGGTTCTCACAGGCTTTCGCAGCAAGGTGCCATTACAAAACGTATGACGGCTATTGAGGAAATGGCAGGAATGGATGTTCTCTGCAGTGACAAAACTGGGACTCTCACCCTAAATAAGCTCAGTGTTGACAAGAATCTGATTGAGGTTTTTGCCAAGGGTATTGAGAAGGATTATGTTATCCTTCTTGCAGCCAGGGCTTCTAGGACTGAGAATCAAGATGCTATAGATGCTGCAATTGTTGGGATGCTTGCTGATCCAAAGGAGGCACGAGCTGGTATCAGAGAGGTCCACTTTCTTCCGTTCAATCCTGTGGACAAGAGGACTGCTCTGACTTACATTGATTCTGATGGAAATTGGCACCGATCTAGCAAAGGTGCTCCTGAGCAGATATTGAACCTCTGCAACTGCAAAGAGGATGTCAGAAAGAGGGTTCATGGAGTGATTGACAAGTTTGCTGAGCGTGGACTCCGTTCGTTAGGTGTTGCTAAACAGGAGATACCTGAGAAAAACAAGGATAGTCCTGGTGCACCGTGGCAGTTTGTTGGTCTGCTACCACTTTTCGATCCTCCAAGACACGACAGTGCGGAAACCATCACAAGAGCTCTGAACCTTGGTGTGAATGTTAAGATGATTACTGGTGATCAGCTTGCCATTGCCAAGGAAACTGGCAGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCATTACTTGGACAAAGCAAGGATGCTTCTGTTTCAGCTCTTCCAGTTGATGAATTGATTGAGAAAGCTGATGGATTTGCTGGAGTATTTCCTGAACACAAATATGAAATCGTTAAGAGGCTGCAAGAGAGGAAGCATATATGTGGAATGACAGGTGATGGTGTCAACGATGCCCCTGCATTAAAGAAAGCAGACATTGGAATTGCTGTTGCTGACGCGACAGATGCTGCTAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGTCTGAGTGTCATTATTAGTGCAGTGCTGACCAGCAGGGCCATTTTCCAAAGGATGAAGAATTATACTATCTATGCAGTGTCAATCACCATTCGTATAGTGTTTGGTTTCATGTTTATTGCATTGATTTGGAAATTTGATTTTGCACCCTTCATGGTGTTGATTATTGCAATACTGAACGATGGTACTATCATGACAATTTCCAAGGATCGAGTGAAACCATCTCCTCTGCCAGACAGCTGGAAGCTGAGGGAGATATTTGCCACTGGTGTTGTGCTAGGTAGTTACTTGGCACTAATGACAGTGGTATTTTTCTGGCTCATTAAGGATACCAATTTCTTCTCGGACAAGTTTGGTGTGAGGTCAATAAGAAATAGCCCCGGAGAAATGATGGCAGCCCTGTACCTACAAGTCAGTATTATAAGTCAAGCACTGATTTTTGTCACAAGGTCCCGCAGCTGGTCTTATGTCGAAAGACCTGGTCTTCTCCTACTGAGTGCTTTTATGATTGCACAGCTGGTGGCAACATTTCTAGCAGTATATGCTAACTGGGGCTTTGCAAGAATTGAGGGAATGGGATGGGGTTGGGCTGGTGTAATCTGGCTCTACAGTTTAGTGACATATGTTCCACTTGATATACTTAAATTCGCAATCCGCTATGTTCTGAGTGGGAAGGCTTGGGACAATCTTTTGGAGAACAAGACTGCCTTCACTACAAAGAAAGACTATGGAAAAGAAGAGAGAGAAGCACAATGGGCAACTGCACAGAGAACTCTTCACGGTCTTCAGCCACCTGAAACAACCAACCTTTTCAATGACAAGAACAGTTACAGAGAGCTTTCAGAGATTGCTGAACAAGCCAAGAGACGTGCTGAGGTTGCTAGACTGAGGGAGCTTCATACACTGAAAGGGCATGTTGAGTCAGTGGTGAAGCTGAAAGGACTTGACATAGACACAATCCAACAGCATTACACAGTTTAA 2703 0.4495 MQERIPVEEVFEQLKCSRAGLTSEEGASRLQVFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIIALLFINSTISFIEENNAGNAAAALMAGLAPKTKGDALSVDQSALTGESLPVTKNPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGIIIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFAKGIEKDYVILLAARASRTENQDAIDAAIVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRSSKGAPEQILNLCNCKEDVRKRVHGVIDKFAERGLRSLGVAKQEIPEKNKDSPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDASVSALPVDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLREIFATGVVLGSYLALMTVVFFWLIKDTNFFSDKFGVRSIRNSPGEMMAALYLQVSIISQALIFVTRSRSWSYVERPGLLLLSAFMIAQLVATFLAVYANWGFARIEGMGWGWAGVIWLYSLVTYVPLDILKFAIRYVLSGKAWDNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQPPETTNLFNDKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQQHYTV 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02840 900 SFLD p-type atpase 260 588 IPR044492 -
Vimu10g02840 900 SMART Cation_ATPase_N_a_2 1 73 IPR004014 -
Vimu10g02840 900 Pfam Cation transporter/ATPase, N-terminus 5 67 IPR004014 -
Vimu10g02840 900 Pfam haloacid dehalogenase-like hydrolase 274 551 - -
Vimu10g02840 900 Coils Coil 851 871 - -
Vimu10g02840 900 PANTHER CALCIUM-TRANSPORTING ATPASE 5 121 - -
Vimu10g02840 900 Gene3D - 51 105 - -
Vimu10g02840 900 Gene3D - 166 764 - -
Vimu10g02840 900 NCBIfam plasma-membrane proton-efflux P-type ATPase 121 755 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g02840 900 Pfam E1-E2 ATPase 122 257 - -
Vimu10g02840 900 FunFam Plasma membrane ATPase 430 585 - -
Vimu10g02840 900 SUPERFAMILY HAD-like 274 584 IPR036412 -
Vimu10g02840 900 ProSitePatterns E1-E2 ATPases phosphorylation site. 280 286 IPR018303 -
Vimu10g02840 900 FunFam Plasma membrane ATPase 290 437 - -
Vimu10g02840 900 PRINTS H+-transporting ATPase (proton pump) signature 394 412 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 PRINTS H+-transporting ATPase (proton pump) signature 537 553 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 PRINTS H+-transporting ATPase (proton pump) signature 568 593 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 PRINTS H+-transporting ATPase (proton pump) signature 709 730 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 PRINTS H+-transporting ATPase (proton pump) signature 509 525 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 SUPERFAMILY Calcium ATPase, transduction domain A 123 178 IPR008250 -
Vimu10g02840 900 CDD P-type_ATPase_H 20 790 IPR006534 GO:0008553|GO:0016020|GO:0120029
Vimu10g02840 900 SFLD C1.7: P-type atpase like 260 588 - -
Vimu10g02840 900 Gene3D - 20 120 - -
Vimu10g02840 900 Gene3D - 290 437 IPR023299 GO:0000166
Vimu10g02840 900 Gene3D - 275 574 IPR023214 -
Vimu10g02840 900 PRINTS P-type cation-transporting ATPase superfamily signature 432 443 - -
Vimu10g02840 900 PRINTS P-type cation-transporting ATPase superfamily signature 537 556 - -
Vimu10g02840 900 PRINTS P-type cation-transporting ATPase superfamily signature 128 142 - -
Vimu10g02840 900 PRINTS P-type cation-transporting ATPase superfamily signature 278 292 - -
Vimu10g02840 900 PRINTS P-type cation-transporting ATPase superfamily signature 454 464 - -
Vimu10g02840 900 PRINTS P-type cation-transporting ATPase superfamily signature 560 572 - -
Vimu10g02840 900 Gene3D - 849 900 - -
Vimu10g02840 900 SUPERFAMILY Calcium ATPase, transmembrane domain M 4 796 IPR023298 -
Vimu10g02840 900 Gene3D - 121 165 - -
Vimu10g02840 900 NCBIfam HAD-IC family P-type ATPase 125 296 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 NCBIfam HAD-IC family P-type ATPase 512 627 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vimu10g02840 900 FunFam ATPase 4 plasma membrane-type 521 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02840 Vimu-Chr10 39688193 39693135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02840 3 900 Primary Pumps ATPases AT3G42640 80.856 0.0 1528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02840 K01535 - gmx:547525 1678.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02493 1 36166415 36174441 Vimu10g02840 10 39688193 39693135 PCT