Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02836 ATGGTCAATGGTGTGGTTAGTGTTGAGCTTCTTTTCAGCGCTGAAATAGCGGAGACGGAAATATTTGATGCAAACCTTCGTCCTTTCAAAACGAAGCGTCCTCCCACTTTTTGTGGAATCAGCCCTTCACGCCCCCCGATGGTTTTGAGGATTTGGGGTTATGTGATTCCTCGTAAAAAAGGTTGCTTTGCTTTTTTGATCGGTCATGGTTCATTTGAAGGGAGTACGCCATTGATGGATGAATATTCTGGTAAAAGAGCCATTGATGGGATGGTAATCCCTAGAAAGGGGGTGAGCCATGTGTTTAGAGACGCTGCTAATGCTAAAGATCGAAATGGTCAGGTGTGCAGCCGCCTTACTTGCAGTAGCAGAGTCAACACTTCTAAAGGTGCTCAAATTGGTTCTTCTGAAAAAGGAAAATCTTTGAAACCTTCTATTCAATCTTCTTCTGCTGGAAAGGAAGCAGTTGGAAGCTCCTCTAGAACTTTTCCCAAGACTAGTAGCCCTGGAAAACCGCTTATAAAGCCTCGGAAAAAAGCATCATCTCAGTTAGAGACAGATTCGTCTGAAACTAGTAGTGTATTGGATGAATCAGAGGTTTCACAACTCGCCCCTTCCCCTGTAAAAAGTCAGACAGGGCTTCAAGCTGAAATGGAAAAGACAGTGTCTGGTAATGTCATGATGGAAGTAGGAAGCTCAAGTGTGGTATCCAATTCAAGATCTCGGAGGAATTTTCATCCAAAGTCTGGAATTAGTGGTCAGGAAATTAAAAACACTGGTTCAGGGATGCGTGCTGGTACCAGTAGGTATGGATTGAGGAATCTCAAATGCAACTCTATTTCTGATGTCCTCCCTGCCGGCTGTTCATCTTCAGATTCAACCCTTAACAGAAGGAAGGACATGATAAAAAAGAGGAATTGTGAAGGGGAAGGTAGCTCGTCTGCTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGGACGGAGTTCTGGTTCCAGAAATGGCATATCCATTTCTGATTCAAGAATATCTAGGAATACTCCTCCTCACAGGGACAGGTCAGACAGCAACCTGGCACCAGTTAGAACTCGAAAATCAATTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGCCAATCCCGTGTCACCCAATCAGTCCCCTGTCATGATACCTTCTTTGTCTCATTCTGGTGGTCGTAATGCTTCTGGTGTATCACATCGTACTTCTGTAGATAGTTCCTTAAGTTGTCCTAGCTCTCACAGTAGGCCAGGTACTGGCAGTGAGGAGTTATATGGTGTTATGCCTGGGTCTCCTTCAGAATATGGCCTCACTCATTCTATAATGAATCTGGATAGCTTTCGACGGCGTTACAACGTGGATAGTATTGCTGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGTATTAACTTCTACGATCCGCATAGAGACATGCGTTTGGACATTGATAACATGTCATATGAGCAACTTCTGGCTCTGGAAGAGAGGATGGGTTCTGTGAGCACAGCTCTAACAGAGGAAGCGCTATCAGAATGTCTAAAGAAAAGTTTCTTCCAGTCGTCACCCTCTGAAAATGCAGTCAACAGTTGCAAGGAAGCCAAGGATGACACCAAATGCAGCATTTGCCAGCATCATCATGGCTCTAAGCTTTTTCTCCGTGATGGATTTATGATCTACCTGCATCTCCTGTGGAATTTGATTGACAATGGTGAGGAATATGTGGTTGCGGATGAATTGGGGAGTTTGCATTGCGAGCACATGTATCATGTGGTTTGCATACAGCAGTGGCTCCGGCTGAAGAATTGGTGCCCTATTTGCAAAGCATCTGTGGTACCGTCAAATCCATCCACATCTCAATGA 1947 0.4443 MVNGVVSVELLFSAEIAETEIFDANLRPFKTKRPPTFCGISPSRPPMVLRIWGYVIPRKKGCFAFLIGHGSFEGSTPLMDEYSGKRAIDGMVIPRKGVSHVFRDAANAKDRNGQVCSRLTCSSRVNTSKGAQIGSSEKGKSLKPSIQSSSAGKEAVGSSSRTFPKTSSPGKPLIKPRKKASSQLETDSSETSSVLDESEVSQLAPSPVKSQTGLQAEMEKTVSGNVMMEVGSSSVVSNSRSRRNFHPKSGISGQEIKNTGSGMRAGTSRYGLRNLKCNSISDVLPAGCSSSDSTLNRRKDMIKKRNCEGEGSSSARGKKMSGSSLEGRSSGSRNGISISDSRISRNTPPHRDRSDSNLAPVRTRKSISGHARGRLSSQGNANPVSPNQSPVMIPSLSHSGGRNASGVSHRTSVDSSLSCPSSHSRPGTGSEELYGVMPGSPSEYGLTHSIMNLDSFRRRYNVDSIAEVLLALERIEQDVELTHEQIRLLESNLFLTGINFYDPHRDMRLDIDNMSYEQLLALEERMGSVSTALTEEALSECLKKSFFQSSPSENAVNSCKEAKDDTKCSICQHHHGSKLFLRDGFMIYLHLLWNLIDNGEEYVVADELGSLHCEHMYHVVCIQQWLRLKNWCPICKASVVPSNPSTSQ 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02836 648 MobiDBLite consensus disorder prediction 234 265 - -
Vimu10g02836 648 SUPERFAMILY RING/U-box 561 642 - -
Vimu10g02836 648 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 530 642 IPR013083 -
Vimu10g02836 648 SMART ring_2 568 635 IPR001841 -
Vimu10g02836 648 Pfam RING-H2 zinc finger domain 612 636 IPR024766 GO:0008270
Vimu10g02836 648 MobiDBLite consensus disorder prediction 286 436 - -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 296 312 - -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 345 359 - -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 316 344 - -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 185 214 - -
Vimu10g02836 648 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 152 639 IPR045191 GO:0061630
Vimu10g02836 648 Coils Coil 472 492 - -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 128 214 - -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 128 167 - -
Vimu10g02836 648 ProSiteProfiles Zinc finger RING-type profile. 568 636 IPR001841 -
Vimu10g02836 648 MobiDBLite consensus disorder prediction 370 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02836 Vimu-Chr10 39651954 39655962 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02836 454 640 C3H Transcription Factor Family AT2G15530 35.294 1.94e-27 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02836 - - gmx:100787213 840.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02488 1 36121345 36128654 Vimu10g02836 10 39651954 39655962 PCT