Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02828 ATGGCGGTGGAGTTGATGAGCTTGCCGAAAATGGAGGAACAGAAGGCAATTCAAGAAGCAGCCATGGAAGGTCTCAAGGGAATGGAAAACTTCCTCCATCTTCTCTCCAACCAACCCTCTCATCTCAACACTCACCTCACCCAAGCAACCGTTTCAAACTTCAAAAAGCTCATCTCTTTGCTCAACCGAACCGGCCATGCCCGGTTCCGTCGCGCGCCTCTCCCTTCAAACAACCAACCCATTCCACCGGCCAACTCGGTCACCGTCCACCAACCTACCACCACCTTCGCCCCCACGCACTCGCACACTCTCACTCTCGATTTCACCAAACCTAACCTCTTCTCCGCCACCAACAATAACTCCTCGGATCTCGAATTCTCAAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATCTCCTCCGCCATCACCGCCGATGGCAGCGTCTCCAACGGCAACCAAGCCTCCTCTCTCTTCCTCGCCTCGCCTCCGCCGCCTTCTTCCTCCGGAAAACCGCCACTCGTCAAGAAGCGGTGCCACGACCACTCCGACGACGTCTCCGGCTCCACCAAGTGCCACTGCATCAAGAGAAGGAAGAATAGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTACGAAAATCGCCGATATTCCGTCGGACGAGTACTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGGGGTTACTATAAGTGCAGTACGGTGAGAGGATGTCCGGCGAGGAAACACGTGGAACGTGCTTCGGACGATCCGACGATGTTGATTGTGACGTACGAGGGGGAGCACCGTCACACCATTCAGACCGCGTTGCAGGATAACATTTCCGGCGCCGTGGGTTTGGTTTTTCAGTCAACATAG 900 0.5533 MAVELMSLPKMEEQKAIQEAAMEGLKGMENFLHLLSNQPSHLNTHLTQATVSNFKKLISLLNRTGHARFRRAPLPSNNQPIPPANSVTVHQPTTTFAPTHSHTLTLDFTKPNLFSATNNNSSDLEFSKETFSVSSNSSFISSAITADGSVSNGNQASSLFLASPPPPSSSGKPPLVKKRCHDHSDDVSGSTKCHCIKRRKNRVKKTVRVPAISTKIADIPSDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERASDDPTMLIVTYEGEHRHTIQTALQDNISGAVGLVFQST 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02828 299 Pfam Plant zinc cluster domain 177 218 IPR018872 -
Vimu10g02828 299 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 281 IPR044810 GO:0003700
Vimu10g02828 299 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g02828 299 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g02828 299 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g02828 299 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu10g02828 299 Gene3D WRKY domain 207 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu10g02828 299 FunFam WRKY transcription factor 65 204 281 - -
Vimu10g02828 299 MobiDBLite consensus disorder prediction 156 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02828 Vimu-Chr10 39595358 39596712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02828 1 298 WRKY Transcription Factor Family AT2G24570 58.462 1.46e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu10g02828 WRKY 4.5e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02828 - - gmx:100127394 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02828 10 39595358 39596712 Vimu10g02828 10 39595358 39596712 ECH