Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02825 ATGGAAGTTGGTGTATATTTGGCCGTTTTGGTGGTTACTCTTCCGTTGTCCACGGAAGCATTCAAGTCAAACCCGTTTTGTCCAAATCCAAAACCGTTCTCCAGTGATGATGGTAAACAGAGTCTTGAACTTCCTTGGGAAAAGCCAGTCTCTCACAAACACCATGAGAAGGCATTCACAGTGTATCCAGAATGCAAAATGAGTATTGGTGACAAGAACAGAATGAGTCTCAAAATTCCCGCGCTTGCAAAGTTTAAGGTTTTCCCAGAAAACCATGAGCCATGGAAGAAGAAAATTCTTGATCCTGGCAGTGATGTAATTTTGGAGTGGAACAGGGCATTCCTGTTTTCTTGCATTCTGGCACTGTTTGTTGATCCGCTGTTTTTCTACCTTCCTTCAGTGGCAAATGATGGGAAATCGTCGTGTATGGCTACTGATTTGAATATAGGAATTGTTGTGACATGTTTCCGAACATTTGCTGATGTTTTCTATCTGCTCAACATGGCCATCAAGTTCAGAACAGCCTATGTATCACCGAGTTCTAGGGTGTTTGGAAGGGGTGAGCTTGTTATGGATCCTAGGCTTATTGCAAGGCGATATTTGAGATCAGAGTTTTTCCTAGATCTTGTTGCTACACTACCTCTTCCCCAGATTGTGATTTGGTTTATCATGCCAGCAATCAGAAGCTCCCATGCTGATCACACCAACAATGCACTTGTACTCATTGTTCTGCTTCAATATGTCCCCAGATTATATTTGATTTTCCCATTAAGTTCTCAGATTATTAAAGCCACTGGAGTAGTTACAAAGACAGCTTGGGCTGGGGCTGCTTACAATCTTTTACTTTACATGCTAGCTAGTCATGTGTTGGGGGCATCATGGTATCTGTTATCAATTGAAAGGCATGCTACTTGCTGGAAATCTGAATGCAGAAATGAAAGCCTCCCTGTAAAATGTGCTCTTAAGTACTTAGACTGCAGCACTTTAAACCAGGATGATCGCATGAAGTGGGTAAACAATACTTCTGTTTTTGGTAACTGCAATCCTGAAAATACCACCAATTTCAACTACGGAATTTTTGCAAGTGCAGTGGAAAATAATGTTATCTCCTCTGTGTTTATAGAGAAGTATCTCTATTGTCTGTGGTGGGGCTTGCAGAACTTAAGGTCCGGTTCCACAGCTATTGGTTTGACCACAAGCACATTCATTGGGGAAACTGCATTTGCAATACTCATGGCTATTCTGGGTCTGGTTTTGTTTGCCCACTTAATTGGTAACATGCAGACTCTGAAACAGTTGCAATGGTTTGTCATCTTGGTCATTCTCATTTCAGAAGGAGTTACTATCATCATCAAACAAACCTATTTGCAATCTATTACTGTGAGGCTTGAAGAATGGAGGCTCAAGCGACGTGACACTGAAGAGTGGATGAGCCACCGTCAGCTCCCACAAAATCTGAGAGAGCGTGTCAGAAGATTTGTTCAATACAAGTGGCTTGCAACTCGCGGGGTTGATGAAGAAACAATCCTACGTGGCCTGCCTATTGACCTACGTAGAGATATCCAACGCCACCTTTGCTTGGACCTTGTTCGACGTGTTCCTTTTTTCTCACAAATGGATGATCAGCTACTTGATGCAATATGCGAGAGATTGGTATCATCCTTGAGTACTCAAGGCACGTACATAGTTAGAGAAGGAGACCCGGTTACAGAGATGCTCTTTATCATAAGAGGGAGACTTGAAAGTTCAACCACAAATGGAGGCAGAACTGGTTTCTTCAACTCCATTACCTTGAGGCCTGGTGATTTCTGTGGAGAAGAGCTACTTGCTTGGGCATTGCTTCCAAAATCCACTCTCAACTTGCCTTCTTCTACAAGAACTGTTAAAGCCCTTGTAGAAGTTGAAGCATTTGCACTAAGAGCGGAAGATCTTAAATTCGTGGCCAATCAGTTTAGACGTCTCCACAGCAAGAAGTTACAGCACACTTTCCGTTTCTACTCTCACCATTGGAGGACATGGGCAACATGCTTCATTCAGGCTGCTTGGCGCCGGTTCAAGAAGAGAATGTTTGCCAAGAGCCTAAGCTTGAGGGAATCCGAGTCCTTCAATCACTATCAACATAATGAAGAAGAGCACAGTGCAGTGACTTCAAACACTGCACAAGTAAAGCAAAACCTAGGTGTCACTATACTGGCTTCAAGATTTGCTGCAAACACAAGGAGAGGAGTTCAGAAGATGAAGGATGTAGAGCTACCCAAGTTGCAAAAGCCTGAAGAGCCAGACTTTTCAGTAGAGCCTGATGATGATTAG 2310 0.4299 MEVGVYLAVLVVTLPLSTEAFKSNPFCPNPKPFSSDDGKQSLELPWEKPVSHKHHEKAFTVYPECKMSIGDKNRMSLKIPALAKFKVFPENHEPWKKKILDPGSDVILEWNRAFLFSCILALFVDPLFFYLPSVANDGKSSCMATDLNIGIVVTCFRTFADVFYLLNMAIKFRTAYVSPSSRVFGRGELVMDPRLIARRYLRSEFFLDLVATLPLPQIVIWFIMPAIRSSHADHTNNALVLIVLLQYVPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGASWYLLSIERHATCWKSECRNESLPVKCALKYLDCSTLNQDDRMKWVNNTSVFGNCNPENTTNFNYGIFASAVENNVISSVFIEKYLYCLWWGLQNLRSGSTAIGLTTSTFIGETAFAILMAILGLVLFAHLIGNMQTLKQLQWFVILVILISEGVTIIIKQTYLQSITVRLEEWRLKRRDTEEWMSHRQLPQNLRERVRRFVQYKWLATRGVDEETILRGLPIDLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVREGDPVTEMLFIIRGRLESSTTNGGRTGFFNSITLRPGDFCGEELLAWALLPKSTLNLPSSTRTVKALVEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWATCFIQAAWRRFKKRMFAKSLSLRESESFNHYQHNEEEHSAVTSNTAQVKQNLGVTILASRFAANTRRGVQKMKDVELPKLQKPEEPDFSVEPDDD 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02825 769 FunFam Cyclic nucleotide-gated ion channel 1 533 651 - -
Vimu10g02825 769 Gene3D - 127 433 - -
Vimu10g02825 769 Pfam Ion transport protein 110 429 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu10g02825 769 CDD CAP_ED 535 666 IPR000595 -
Vimu10g02825 769 Pfam Cyclic nucleotide-binding domain 558 646 IPR000595 -
Vimu10g02825 769 FunFam Cyclic nucleotide-gated ion channel 1 462 526 - -
Vimu10g02825 769 SUPERFAMILY Voltage-gated potassium channels 104 431 - -
Vimu10g02825 769 Gene3D Jelly Rolls 533 653 IPR014710 -
Vimu10g02825 769 SUPERFAMILY cAMP-binding domain-like 465 657 IPR018490 -
Vimu10g02825 769 ProSiteProfiles cAMP/cGMP binding motif profile. 535 618 IPR000595 -
Vimu10g02825 769 MobiDBLite consensus disorder prediction 746 769 - -
Vimu10g02825 769 Gene3D Helix hairpin bin 463 526 - -
Vimu10g02825 769 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 91 762 - -
Vimu10g02825 769 SMART cnmp_10 535 666 IPR000595 -
Vimu10g02825 769 MobiDBLite consensus disorder prediction 746 761 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02825 Vimu-Chr10 39573009 39576770 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02825 72 765 Ion Channels AT2G24610 70.365 0.0 1023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02825 K05391 - gmx:100803334 1300.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02825 10 39573009 39576770 Vimu10g02825 10 39573009 39576770 ECH