Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02822 ATGGCATTTCAACCCAAAACCAAACTCGGGTCGTTGCCTAGTTCCATTCCAACTACCAAAGAAAAAGAATACGGTGACACCATATTATTTTTCTTCGCCATAGAAAAAGAATACGGCGACACCGTTTTCTTTTTCTTTGGCGGTACAAGTGGAAGTAGGCAACAACCCAAGTTCGGCTTCAGAATTGATAGAGAGTGCGAAATCAAAATCCAAAACCAAAAACAAAAACACCAATTGGGTTGGGACCATTCATCATTCACCGCCTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGTCTCCGAATCACGGCTGAAGTTGCAGCAACAACAAGCCCTCATGCAGCAAGCCTTGCTTCAGCAGCAGCAGATGTACCACCCTGGCATGCTTGCCGCTGCCATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACTTCTGCATGCCGAAATATTCATGTAAATGTCACTGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCTGAAAAGAAAAGGTTTTTGATTCAATATTCAACTCTATCTTCTTTTGTGACCATTGATGCTATTATTATTATTATTGTTGTGCTTTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCACGGACGACAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCAAATAGCAGTAGGGAGGACACATCAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTCCTCATTAGTGGTGAAACGTTGAAGATAGTTAACTGGGGGGAACTTTTCAACAAGTTACTCAGCCTTGAAAGTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTTTGGCATTCAGTTCTATACCTTTGTTCCCTGCTTCTGTGTCATGTTTTTTGTTCATACCAACTTGTGGCAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTACCAGCTCCAATGAAGAGAAGAGCAATGAAAACCAAAATGCTGTGGTGCTTACAAATGGATCTTCAGATGGTGGTCAAGATAATAATAATAACGAAGATGCTCCCGAAAACAATTCTTTATACACCACAGTTTATGTTGGCAACCTTCCTCATGATAGGGGCATCCCCAGTGATTTGTGGGGAACTGCAGATATGGTGAAGGCATTTGTTGTCGTCACATGGTTGCAGAGCTCCTTGCAACCATATTATTGTTGCTTCTTCGTAACACAAGCTGAACTCCATTGCCAATTCCATGCACTGGGGGCTGGGGTAATTGAGGAGGTTCGAGTTCAAAGGGATAAGGGTTTTGGATTTGTTAGATACAACACTCACGAGGAAGCTGCGTTGGCCATTCAGGTGGCTAATGGAAGAATAATCCGTGGGAAGAGTATGAAGTACTCGCATGTAGAGAAGAGACACATGCCTCCACCTAGCCGTACCCTTACCACCTTTGTCCCTTCCCTGTGGGAGCTGATTTACATCATCGGAAGGAGGCCATGTTTTTACAGCATTGTTCCATTCCTTAAACCAACTCCTCCTGGAACAGCTTCGAATCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCGACTGCAGGGATGAACCAAGGTTATTCTCCTGCTGAGTTGTTGGCGTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTACAAATGACCGGACAACACGGCCTAGCTCCTGCTTCAATGGGCGTAAACTCTGGGGGATCTCAAGCCATGTATGATGGATATACGGGTAATTCATCAAGGCAGCAGCTTATGTACTATCGTTGA 1971 0.4424 MAFQPKTKLGSLPSSIPTTKEKEYGDTILFFFAIEKEYGDTVFFFFGGTSGSRQQPKFGFRIDRECEIKIQNQKQKHQLGWDHSSFTALSSSSSSSSSSSVSESRLKLQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRNIHVNVTDKLLAEVFQSAEKKRFLIQYSTLSSFVTIDAIIIIIVVLSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSVQRLLMQLYLLASQSILVVLLISGETLKIVNWGELFNKLLSLESDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGLAFSSIPLFPASVSCFLFIPTCGKWLGNRQIRCNWATKGAGTSSNEEKSNENQNAVVLTNGSSDGGQDNNNNEDAPENNSLYTTVYVGNLPHDRGIPSDLWGTADMVKAFVVVTWLQSSLQPYYCCFFVTQAELHCQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAALAIQVANGRIIRGKSMKYSHVEKRHMPPPSRTLTTFVPSLWELIYIIGRRPCFYSIVPFLKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGVNSGGSQAMYDGYTGNSSRQQLMYYR 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02822 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 366 IPR000504 GO:0003723
Vimu10g02822 656 SUPERFAMILY RNA-binding domain, RBD 457 519 IPR035979 GO:0003676
Vimu10g02822 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 240 IPR000504 GO:0003723
Vimu10g02822 656 MobiDBLite consensus disorder prediction 385 406 - -
Vimu10g02822 656 SMART rrm1_1 152 236 IPR000504 GO:0003723
Vimu10g02822 656 SMART rrm1_1 267 339 IPR000504 GO:0003723
Vimu10g02822 656 SMART rrm1_1 412 516 IPR000504 GO:0003723
Vimu10g02822 656 SUPERFAMILY RNA-binding domain, RBD 154 244 IPR035979 GO:0003676
Vimu10g02822 656 Gene3D - 388 523 IPR012677 -
Vimu10g02822 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 471 513 IPR000504 GO:0003723
Vimu10g02822 656 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 329 IPR000504 GO:0003723
Vimu10g02822 656 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 411 520 IPR000504 GO:0003723
Vimu10g02822 656 SUPERFAMILY RNA-binding domain, RBD 293 421 IPR035979 GO:0003676
Vimu10g02822 656 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 468 522 - -
Vimu10g02822 656 Gene3D - 100 251 IPR012677 -
Vimu10g02822 656 Gene3D - 281 384 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02822 Vimu-Chr10 39541989 39557041 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02822 157 590 Eukaryotic Initiation Factors Gene Family AT4G34110 22.484 2.40e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02822 K13201 - gmx:100777108 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02822 10 39541989 39557041 Vimu10g02822 10 39541989 39557041 ECH