Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02821 ATGTGGTTGCCAAAGCATCGGTCAGATAAAAAGGATGGTGTGAGTGGATTAATAGCAGTGGCAATTGATAAAAAGAAAGAGAGCCAATCTGCACTCAAATGGGCAGTTGACAATCTCCTCACCAGAAGTGCAACAGTAATTCTCATCCATGTCAAGCTTCTCGCACCAACCCTGTCTCCATCACCTTCTCTTTTCGCCCCTAGGATAAGTTCTTTCCTGGGTGATGATACTTCAGTGGTAAGCAAAGAACACGAAGGCCAAAACAGAAGTGTTTTCCTCCCATATCGTGTCTTCTGTACAAGGAAAGATATGAATGTTTGTGGAAATGAAAGCAGCTATCTTGCTGATGGTGTTCATCTTAGAATTCTTATCATCTCTTTTGTTTTGTTTCTTGGTGTGATTCAATGCAAGGATGTCCTACTAGAAGATTCAGAAGTACCCAGAGCTATAATTGAATATGCTTCTCAGACAGGAGTTGAGCATCTGGTTCTTGGCTCTTCAGCAAAAACTAGTTTTCTCAAAAGATTCAAGGTGTCAGATATTCCAGGAGAAATTGCAAAAGGGGCGCCAGATTTCTGTACTGTCTATGTTATTGCCAAAGGAAAGATTCAAACTATGCGATCTGCCACTCGTCCTGCACCTGCCATTTTCTCTAACCAGCTCTGTCAAGTTAACAATGGCAGGTCAAACCTTTCAGAGCCAAATGTGTACTCAGCTCGAAGCATAAGAGTTGGTTTCTATCAGAACAAGAAACGTATTCCTTTGATGCTGGATCACAGTATGATGAAACATTCAGGTCGGTCACCATTTACTAGGAAACGTTACAATGGCAGACAATATGGGGACACTCCCAATTTAGATACGGACATATCCTTTGTAAGCTCTGGAAGGAGAAGCACAGAACGTTTGATCCCTTCATTGAACTTAGATACAGGAATATCCAACAGTCGGCTATCATATAGCTCAGACATAGATGCAAACTTCAGCTTTGAGTCAGGGTCTTATCGAAGGAAGTCTACGGAAATGGGCTCTCCTCTTGAATTATCATCATTCTCATTTGAAAGTGATAAGCAGTCATCTTGTTCGTCACAAACAGCGGTAAGGAAAGTTCGCAGTGCTGATGACATGGAAGCTGAAATGAGGAGATTGAAGTTGGAGCTGAAGCAGACCATGAAAATGTATAACACGGCTTGTAAAGAAGCACTCACAGCACAACAGAAGGCAGTGGAACTTCAGCGGTGGAAAATAGAGGAAGAGAGGAGATTGGAAGAAGCAAGGCTGGCTGAGGAAACAGCACTGGCAATTGCAGAAAAGGAGAAAGCAAAGTCTAAAGCAGCCATTGAGGCTGCTGAAGCACAAAAAAGGATTGCAGAACTGGAGGCACAGAAGAGACTCAGTGCAGAAATGAAAGCACTTAAAGAATCAGAGGAGAAAAGAAAAGTTCTTGAATCTTTGGTAAATGTAGATGTCAGGTATAGAAAATACACTATTGAGGAGATTGAAGAAGCAACAAATTTTTTTTCTGAATCCCTTAAAATTGGAGAAGGAGGATATGGTCCTGTTTTCAAGTGCCTTTTGGATCACACCCCTGTTGCAGTCAAGGTTCTACGCCCTGATGCACAACAAGGAAGATCACAGTTTCAGCGAGAGGTTGAGGTATTGAGCTGCATACGGCATCCACACATGGTTCTACTCCTAGGAGCATGTCCAGAATATGGATGTCTAGTGTATGAGTATATGGCAAATGGCAGCTTGGAAGATCGCCTCTTTCGACAAGGCAACACTCCCCCACTTCCTTGGCAGCTCAGATTCAAGATAGCAGCTGAGATCGGCACAGGCTTGCTGTTCCTGCACCAGACAAAACCAGAACCTCTGGTTCACAGGGACTTGAAACCAGCCAACATCTTGCTTGACAGAAACTTTGTGTCCAAAATCAGTGATGTAGGTTTGGCCAGGCTAGTTCCACCATCTGTGGCAGACTCTGTCACGCAGTATCACATGACATCCACAGCCGGAACCTTCTGCTACATAGATCCTGAGTACCAGCAGACAGGAATGCTGGGAGTGAAATCAGACATATACTCCCTTGGGATCATCTTTTTACAAATTTTGACAGCAAAATCACCTATGGGTTTGACCCATCATGTTGCAAGAGCCATTGAGAAGGGAACTTTATCTGAGATGTTGGATCCATCACTCTCTGATTGGCCACAAGAGGAGGCCTTGAATTTTGCTAAGTTGGGAGTGCAGTGTGCTGAATTAAGGCGCAGAGACAGACCTGATCTTGGCAAGGTTGTCCTACCAGAACTCAACAGACTCAGAAACCTTGCTGAAGATACTGACCTTATTTCAGCTTTGGGTAACCCTACCAATATGCCCCGAGACAGACATGTTTCAGCTGTACTTGAAGGAGATATTCCTCCATTTCCTAACCCTGTCTCAGGGGAAATTAGAGCTAACAATTCAGTGGCTTTCTGA 2478 0.4366 MWLPKHRSDKKDGVSGLIAVAIDKKKESQSALKWAVDNLLTRSATVILIHVKLLAPTLSPSPSLFAPRISSFLGDDTSVVSKEHEGQNRSVFLPYRVFCTRKDMNVCGNESSYLADGVHLRILIISFVLFLGVIQCKDVLLEDSEVPRAIIEYASQTGVEHLVLGSSAKTSFLKRFKVSDIPGEIAKGAPDFCTVYVIAKGKIQTMRSATRPAPAIFSNQLCQVNNGRSNLSEPNVYSARSIRVGFYQNKKRIPLMLDHSMMKHSGRSPFTRKRYNGRQYGDTPNLDTDISFVSSGRRSTERLIPSLNLDTGISNSRLSYSSDIDANFSFESGSYRRKSTEMGSPLELSSFSFESDKQSSCSSQTAVRKVRSADDMEAEMRRLKLELKQTMKMYNTACKEALTAQQKAVELQRWKIEEERRLEEARLAEETALAIAEKEKAKSKAAIEAAEAQKRIAELEAQKRLSAEMKALKESEEKRKVLESLVNVDVRYRKYTIEEIEEATNFFSESLKIGEGGYGPVFKCLLDHTPVAVKVLRPDAQQGRSQFQREVEVLSCIRHPHMVLLLGACPEYGCLVYEYMANGSLEDRLFRQGNTPPLPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNFVSKISDVGLARLVPPSVADSVTQYHMTSTAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKSPMGLTHHVARAIEKGTLSEMLDPSLSDWPQEEALNFAKLGVQCAELRRRDRPDLGKVVLPELNRLRNLAEDTDLISALGNPTNMPRDRHVSAVLEGDIPPFPNPVSGEIRANNSVAF 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02821 825 Gene3D Phosphorylase Kinase; domain 1 486 579 - -
Vimu10g02821 825 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 479 579 - -
Vimu10g02821 825 SUPERFAMILY Protein kinase-like (PK-like) 490 766 IPR011009 -
Vimu10g02821 825 PANTHER OS02G0152300 PROTEIN 18 798 - -
Vimu10g02821 825 ProSiteProfiles Protein kinase domain profile. 507 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02821 825 FunFam U-box domain-containing protein 51 580 780 - -
Vimu10g02821 825 Gene3D Transferase(Phosphotransferase) domain 1 580 785 - -
Vimu10g02821 825 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 190 - -
Vimu10g02821 825 SMART serkin_6 507 770 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02821 825 Coils Coil 433 479 - -
Vimu10g02821 825 Pfam Protein kinase domain 509 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02821 825 Coils Coil 373 393 - -
Vimu10g02821 825 CDD STK_N 17 201 - -
Vimu10g02821 825 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vimu10g02821 825 Gene3D HUPs 17 198 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02821 Vimu-Chr10 39535853 39539868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02821 1 799 Receptor kinase-like Gene Family AT1G78940 53.752 0.0 775
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu10g02821 Pkinase 3.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02821 - - gmx:100803867 1090.87