Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02818 ATGGCGCATATGGTAGAGTACTCCTGTCTTCTCATGCTCTTCACTTGTTTTTTGCCTTCACTCGCTGACAATGCTCAAGTTCTGATGAACTTCAAAACATTCTTGTCCAATGCTGATGCTTTAAGCAACTGGGGGAACCAATCAATCGGTGTGTGCAGCTGGACTGGTGTACTGTGTTTCAATCAGAGTTTTCATGGCTTGAGATTAGAACACATGGGACTGGGTGGCACTGTTGACGTAGACACGCTGCATCTGTTGTCCAATTTGAACAGCTTTAGTGTCATTAACAATAACTTCGAGGGTCCAATGCCCGAATTCAAGAAGCTTGTCAATTTAAGGGCGTTGTTTCTGAGCAATAATAAGTTCTCTGGTGAAATCCCAGATGATGCTTTTGATGGCATGAAACGTCTCAAGAGAGTATTCTTGGCTGAAAATGAGTTCACTGGTCATATTCCTACGTCCTTGGCTCAATTGCCTAAACTTTTTGATGTGGACATACATGGAAATAGTTTTGAAGGAAACATACCAGAATTTCAACAGAGTGATTTCAGAGTGTTTAATCTGTCTTACAACAAATTAGAGGGTCGAATACCAGAAAGCTTAAGCAGCAAGGATCCAACTTCATTTGCTGGTAATCAAGGTCTATGCGGAGATCCTCTAGGCCCCTGCATCGGAAGCCCCACCACACCATCGGACACTGATCAACCGCCAAATTCACATCCAGAAAAAGAAAACAAGAAAAAACGCATTATTCTAACAGTTGTTGTAGTGGTGGGGGTGATTGTGCTGGCTTCAATAATAGCACTCCTGATAATCCGTTACCGTCGAAAGAAACCCGTGCTGGTCAAAGATGCACAACCCCAGAACGTTACTCCATTTTCTAGCGAGTCCAAATCCATTGTTGTGACAGCCGAATCCAAGAAAAGTGAAGACGGAGGGTTGAACTTCGTCGGGAACCAGAGGGAGGGGATTGACTTGCAAGACCTGCTAAGGGCCTCGGCTGAGGTTCTGGGAAGTGGTAGCTTTGGATCCACTTATAAGGCCATGCTTCTGAACGGGCCAGTGGTGGTGGTGAAGAGATTCAAGAACATGAATGACGTGGGGAAGAAAGAGTTTTTCGACCACATGAACAGGCTCGGAAAATTGTCACATCCCAATCTACTCCCTCTCGTTGCATTCTACTACGGAAAAGAAGAGAAGCTTTTGGTTCATGACTTTGCTGAAAATGGCAGCTTGGCCAGTCATCTTCACGGAAGAAGCGGTGTTGAGTTGAACTGGGCAACTCGTTTGAAGATCATAAAAGGAGTGGCGAGGGGATTGGCTTATCTGTACACGGAGTTCCCGAACCAAGCATTACCGCACGGTCATCTGAAATCATCAAACGTTGTACTGGACAGTTCCTTCGAGGCTCGTTTGGCAGAGTACGGACTTGTGGCGGTGGTGGAGAAGAGCCACGCTCAGCAGTTCATGGTGGCTTACAAGTCTCCAGAGGCGAGCCAGTCTGAGAAGCCAAGCGAGAAGAGCGATGTGTGGTGTCTGGGGATTCTGATACTGGAGCTTTTGACGGGGAAGTTCCCTGCGAGTTATCTGAGGCATGGGAAGGGAGCGAGTGAGGATTTGGCGGCGTGGGTGAACTCCATAGTGAGCGAAGGGTGGAATGGGGAGATGCTTGATAAGGAGATTCCTGGGAGAGGGAGTGGAGAAGGTGAGATGGTGAAGCTGTTAAGGATTGGAATGGGGTGCTGTGAATGGAGCTTGGAGAGTAGGTGGAGTTGGAAGGAAGCTGTGGCAAAGATCGAGGAGTTGAAGGAGAGTGACGATGGTGGTGACGGTGGAAGTGAACGGGATCATCTCTACTCAGTTTCTACCAGTCTCGATGACTTCTCTCTCTCACAGTCTATTTCATGA 1908 0.4722 MAHMVEYSCLLMLFTCFLPSLADNAQVLMNFKTFLSNADALSNWGNQSIGVCSWTGVLCFNQSFHGLRLEHMGLGGTVDVDTLHLLSNLNSFSVINNNFEGPMPEFKKLVNLRALFLSNNKFSGEIPDDAFDGMKRLKRVFLAENEFTGHIPTSLAQLPKLFDVDIHGNSFEGNIPEFQQSDFRVFNLSYNKLEGRIPESLSSKDPTSFAGNQGLCGDPLGPCIGSPTTPSDTDQPPNSHPEKENKKKRIILTVVVVVGVIVLASIIALLIIRYRRKKPVLVKDAQPQNVTPFSSESKSIVVTAESKKSEDGGLNFVGNQREGIDLQDLLRASAEVLGSGSFGSTYKAMLLNGPVVVVKRFKNMNDVGKKEFFDHMNRLGKLSHPNLLPLVAFYYGKEEKLLVHDFAENGSLASHLHGRSGVELNWATRLKIIKGVARGLAYLYTEFPNQALPHGHLKSSNVVLDSSFEARLAEYGLVAVVEKSHAQQFMVAYKSPEASQSEKPSEKSDVWCLGILILELLTGKFPASYLRHGKGASEDLAAWVNSIVSEGWNGEMLDKEIPGRGSGEGEMVKLLRIGMGCCEWSLESRWSWKEAVAKIEELKESDDGGDGGSERDHLYSVSTSLDDFSLSQSIS 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02818 635 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 80 175 - -
Vimu10g02818 635 Gene3D Phosphorylase Kinase; domain 1 297 406 - -
Vimu10g02818 635 Pfam Leucine rich repeat N-terminal domain 23 59 IPR013210 -
Vimu10g02818 635 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Vimu10g02818 635 SUPERFAMILY L domain-like 27 204 - -
Vimu10g02818 635 Gene3D Ribonuclease Inhibitor 22 182 IPR032675 -
Vimu10g02818 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 606 IPR046959 -
Vimu10g02818 635 ProSiteProfiles Protein kinase domain profile. 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02818 635 MobiDBLite consensus disorder prediction 220 245 - -
Vimu10g02818 635 Pfam Leucine rich repeat 111 170 IPR001611 GO:0005515
Vimu10g02818 635 Pfam Protein kinase domain 334 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02818 635 Gene3D Ribonuclease Inhibitor 184 223 IPR032675 -
Vimu10g02818 635 Gene3D Transferase(Phosphotransferase) domain 1 407 617 - -
Vimu10g02818 635 SUPERFAMILY Protein kinase-like (PK-like) 335 600 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02818 Vimu-Chr10 39518534 39520901 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02818 4 627 Receptor kinase-like Gene Family AT5G35390 44.684 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vimu10g02818 Pkinase 4.7e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02818 - - gmx:100803999 956.436