Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02808 ATGACGACCACGGAGTCCGATCTCGATAACGACTTTCCTAATCTCGACGAGCTCCGGTATCTGAACCTCGCCGGAACCGATGTCTTCGCCGCTTTCCAAAACCTATTACCGGATGCTATGACTTCATTTTCAACTTGTGGGCTGACAGACCCTTTTTCTTCCCAAAACCTCACTCCCAAGCATTCCACCATCACTGCTACAATCGATTCTCGGTCTTCCATTTGTGGCACTGCTAATGTTGGTAGTCCAGTGTCAGCTAATAAACCAGAGGGCTGGAAGAATCATACGAAAGGAGCCACGAGTGGTTCCTCTGAGCCATCTGATGAAGATGGTCCTTGTGAACAGAGCACAAATGCAGTTGAATTGAAACGTCTTAGAAGGAAGGTTTCTAATCGCAATTCTGCCAGAAGGTCAAGAAGAAGAAAACAAGCACAGTTGGCTGACCTAGAGTTGCAGGTTGAAAAACTGAAAGTGGAAAACGCAACCCTATACAAGCAGTTCAATGATGCTAGTCAACATTTTCGTGAGGCTGACACGAATAACCGGGTGCTGAAATCAGACGTAGAAGCTTTGAGAGCTAAGGTGAAGTTAGCAGAGGACATGGTGACCAGAGGCTCTTTCACTACGTTAAACAATCAGCTTCTTCCCACACAGTGTCAAGTGAACACACCCCCGCCACTGAACACGACCAATCTCCGCCGCATGGCGCATGTTTCGCCAACCATCACTGTGCATGGAAATGATGGGTCATACAACGATGCCACAGTTTGTGTACAGAATTCAGACCTTGGAAACTTGGACATGAATTTCAACGACATGAACAATGTGAACGGAGTTATGAGCGATGGCATGAGTTGTGGGAGTATTTGGCCACCTTTTTAG 882 0.4683 MTTTESDLDNDFPNLDELRYLNLAGTDVFAAFQNLLPDAMTSFSTCGLTDPFSSQNLTPKHSTITATIDSRSSICGTANVGSPVSANKPEGWKNHTKGATSGSSEPSDEDGPCEQSTNAVELKRLRRKVSNRNSARRSRRRKQAQLADLELQVEKLKVENATLYKQFNDASQHFREADTNNRVLKSDVEALRAKVKLAEDMVTRGSFTTLNNQLLPTQCQVNTPPPLNTTNLRRMAHVSPTITVHGNDGSYNDATVCVQNSDLGNLDMNFNDMNNVNGVMSDGMSCGSIWPPF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02808 293 Coils Coil 132 166 - -
Vimu10g02808 293 MobiDBLite consensus disorder prediction 80 118 - -
Vimu10g02808 293 SMART brlzneu 119 183 IPR004827 GO:0003700|GO:0006355
Vimu10g02808 293 CDD bZIP_plant_GBF1 140 175 IPR045314 GO:0003700|GO:0006355
Vimu10g02808 293 Pfam bZIP transcription factor 121 171 IPR004827 GO:0003700|GO:0006355
Vimu10g02808 293 Gene3D - 122 178 - -
Vimu10g02808 293 SUPERFAMILY Leucine zipper domain 122 173 IPR046347 GO:0003700|GO:0006355
Vimu10g02808 293 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 121 184 IPR004827 GO:0003700|GO:0006355
Vimu10g02808 293 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 126 141 IPR004827 GO:0003700|GO:0006355
Vimu10g02808 293 FunFam BZIP transcription factor 121 172 - -
Vimu10g02808 293 MobiDBLite consensus disorder prediction 94 114 - -
Vimu10g02808 293 Coils Coil 181 201 - -
Vimu10g02808 293 PANTHER BASIC LEUCINE ZIPPER 63 53 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02808 Vimu-Chr10 39441307 39445679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02808 69 291 bZIP Transcription Factor Family AT5G24800 48.261 7.12e-56 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vimu10g02808 bZIP_1 1.2e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02808 K25784 - gmx:778131 423.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02808 10 39441307 39445679 Vimu10g02808 10 39441307 39445679 ECH