Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02802 ATGTTATCTTTTGATGAAATAGGGAAAGCTAAGATGGGTGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCGACTGGTGTGAGAACCAATAGAGCAACAAACACAGGTTATTGGAAGACAACAGGGAAAGACAAGGAGATCCTCAACAGTGGGACATCAGAATTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGAAGAGCTCCAAGAGGAGAGAAAAGCAACTGGGTCATGCATGAATACCGCATTCACTCAAAGTCCAGTTTCAGAACAACTAGGGTACATATAATCTTAGAAAACTCATCTACTCTATTTTAA 333 0.3934 MLSFDEIGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSGTSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSFRTTRVHIILENSSTLF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02802 110 Gene3D NAC domain 4 107 IPR036093 GO:0003677|GO:0006355
Vimu10g02802 110 Pfam No apical meristem (NAM) protein 8 88 IPR003441 GO:0003677|GO:0006355
Vimu10g02802 110 ProSiteProfiles NAC domain profile. 1 110 IPR003441 GO:0003677|GO:0006355
Vimu10g02802 110 SUPERFAMILY NAC domain 8 94 IPR036093 GO:0003677|GO:0006355
Vimu10g02802 110 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02802 Vimu-Chr10 39397992 39398324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02802 9 98 NAC Transcription Factor Family AT2G24430 87.778 1.80e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu10g02802 NAM 5.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02802 - - egt:105957855 186.422