Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02800 TATGTTCGATTATTAATTCGTTCCTTCGAAAATAATCACATGGAAAGGGAACGTACACGGAAACGCCCTCGTCTCGCATGGGACGTAGCCCCTCCCACAGTGCTCGAGCCTCAACTGGCTCTGCCGGTACCTGGTGACGAAGGAATTGAAAGGAAGCACGCTTCACCTCCAAGGAGGGACGACGATCGAGAAGGACACTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATGTAATTCTTTTAGTCCTAGGGATTTCTTTGCTGTAGGCACATTTGGTCGGGTATTGGAATGTTGGGACCGCGTAACTAGAGAATATGTGGCTGTCAAGGTAGTTAGAAGCATACGGAAATATCGAGATGCAGCCATGCTCGAGGTTGATGTGCTTCAACATCTAGCAAAGAACGATAGAGGAAACTCACGATGTGTGCAGATCCGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGACAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGATCTGAAGCCAGAAAATATTCTTCTGGTTTCTTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAGTTTCCTCAGATGAAACGCAGTTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCCCCTGAGATTATTCTAGGTCTAGGGTGGTCATATCCATGTGATCTGTGGAGTGTTGGATGTATTCTTATTGAACTATGCACGGGTGAGGCGTTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCAATTCCAGAGCCCATGATTCGAAGGTCCAATAAGGGCGCAGAAAAGTATTTCAAGCGTGGATCAAGACTAAGATGGCCTGAAGGAGCTATTTCTAGGGAGAGCATCAATGCAGTAAAGAAGCTTGGTCATCTGAAGGATATTATATCTCGAAGTGTGGACTCTTCAAGGTCCTCTTTAACTGACTTGTTACATGGGTTATTGTCATATGACCCAGCCAAACGGTTAACCGCTCTTCAAGCGCTCGATCATCCCTTCTTTAGGAATCCAACCTGA 1236 0.4393 YVRLLIRSFENNHMERERTRKRPRLAWDVAPPTVLEPQLALPVPGDEGIERKHASPPRRDDDREGHYVFNLGENLTPRCNSFSPRDFFAVGTFGRVLECWDRVTREYVAVKVVRSIRKYRDAAMLEVDVLQHLAKNDRGNSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRVSSDETQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCTGEALFQTHENLEHLAMMERVLGPIPEPMIRRSNKGAEKYFKRGSRLRWPEGAISRESINAVKKLGHLKDIISRSVDSSRSSLTDLLHGLLSYDPAKRLTALQALDHPFFRNPT 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02800 411 FunFam Serine/threonine-protein kinase AFC2 158 407 - -
Vimu10g02800 411 CDD PKc_CLK 66 407 - -
Vimu10g02800 411 MobiDBLite consensus disorder prediction 40 64 - -
Vimu10g02800 411 Gene3D Phosphorylase Kinase; domain 1 67 162 - -
Vimu10g02800 411 SUPERFAMILY Protein kinase-like (PK-like) 78 409 IPR011009 -
Vimu10g02800 411 Gene3D Transferase(Phosphotransferase) domain 1 136 407 - -
Vimu10g02800 411 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 37 409 - -
Vimu10g02800 411 Pfam Protein kinase domain 91 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02800 411 ProSiteProfiles Protein kinase domain profile. 82 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02800 411 SMART serkin_6 82 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02800 411 MobiDBLite consensus disorder prediction 46 64 - -
Vimu10g02800 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02800 Vimu-Chr10 39378434 39382330 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02800 80 409 Core Cell Cycle Gene Families AT1G76540 24.633 1.23e-24 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vimu10g02800 Pkinase 6.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02800 K08287 - gmx:100782453 726.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02800 10 39378434 39382330 Vimu10g02800 10 39378434 39382330 ECH