Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02769 ATGTTTGCAGTTACTCCGGCGACCACGCCGGTTGACGTCATTCCTCAGCCGTTCCCACAACCGGCAGCACCCGCATTCCAATCCTCGCCGTCACCATCGATGTTTATGACGCCTCCAGCCCCTTCCTCCCCATCGCCCGAAACTTTACTCATCCAAGGTTTGCCTCCACCGCCATCTTCAGTTACACCTGTTCCTCTGACGGTGCCGGCGTTGCCGTCTCCGTCGCCGGAATCTCTCACACCGCCGTTTGTAGTTTCACAGTCGCCTCCGGCTCCGACCGCCGCATCGCAGCCACCGCCGTTTCCATATGCCACAGCGCCTTCAACGACGTCGCTTCCGCCGTTTGTAGTTGCGCCATCGCCTCCGTCTCCCACCGCCAATTTTCCACCTGCATTGCCAGATATGCCTCTGACACCGGAGGCGGCGGCGGTGACGACGTCGACTGTTCCTCCACCGCCTTTTCCTCCTTCATTCACGACGGAACCAACCCTGGCAACGCCGTGGAGCCCCGCCTTGCCGTTATCTGCGCCGGAAGTGAATTTGCCGGTGGCTGTGGATTTTCAGAAGGCCTCAACATACCACGTGTCAAGTGGGCTCATTGTTGGGCTTGTAATTGGGGCAATCGTTTTGGTGTTTGTTTTTGGTATTGGATTAGTTCTATGCAGGAATAGGAAGAAAAACAAACAGAAGAATCTGTGCACGGGTCGCTCGAAGGAATCACCACCCTCCATTGAATCCAAGGGATCTCATGTTATTCAAGTGCAACCAAATCCAACGCTGCCACCGAATCTCACATCAGATTCTTTTAAGTCAGTGTATATGAAAACAATTCCAAATCATGCTCCAAGGGCAGCCTTCAGTCCCGGGAATGGTAGTTTCACGTATGATGAAATATTAGCGGCCACTAATTGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGCTTTGGCTATGTGTACAAAGGAGTTCTTCCATGTGGAAAGCAAATTGCAGTTAAGCAACTAAAATCAGGTAGCCAACAAGGAGAGAGAGAATTTCAAGCTGAGGTTGAGACAATTAGTCGAGTGCATCATAAGCATCTTGTTGAATTGGCTGGCTACTGCGTTTCTGGGTCAGAGAGAATGCTTGTTTATGAATTTGTTCCAAATAACACATTGGAATTTCACTTGCACGGGGAGGGGAGTATCTTCTTAGGATGGACGACGAGAATTAAAATTGCCCTCGGATCTGCAAAAGGGCTGGCATATCTACATGAAGATTTGCATCATACAGCACATGAAGTTTCTGACTTTGGCCTTGCAAAAGTCTTTCCAAACAACGATAGCCGTATTAGTCACCTCACCACCCGAGTGATGGGAACCTTTGGATATGTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACTGATAAATCAGATGTATATTCCTACGGAGTCATGCTTTTGGAACTTATAACCGGACGTCCACCAATCACTGCAGCAGGATCGAGGAATGAGAGCTTGGTTGACTGGGCTAGGCCATTGCTTGCTAGAGCACTAAAAGAAGAGAATTTCGACAACCTTGTTGATCCAAGGTTGCAGAAAAATTGCGATACTGATGAGATGGTTAGAATGATTACATGTGCAGCTGCTTGTGTGCGCCATTCATCCAGGCTTCGACCTCGTATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTTACTGATCTTGTTGGAGATGTTACAGTGGAGAATACCCCAGAACACAATTGGTCAAAGTATTTAGATTATGGTGACAACCAATACCAGTATGACTTTAAGAGGTTTTAA 1815 0.4848 MFAVTPATTPVDVIPQPFPQPAAPAFQSSPSPSMFMTPPAPSSPSPETLLIQGLPPPPSSVTPVPLTVPALPSPSPESLTPPFVVSQSPPAPTAASQPPPFPYATAPSTTSLPPFVVAPSPPSPTANFPPALPDMPLTPEAAAVTTSTVPPPPFPPSFTTEPTLATPWSPALPLSAPEVNLPVAVDFQKASTYHVSSGLIVGLVIGAIVLVFVFGIGLVLCRNRKKNKQKNLCTGRSKESPPSIESKGSHVIQVQPNPTLPPNLTSDSFKSVYMKTIPNHAPRAAFSPGNGSFTYDEILAATNCFSESNLLGEGGFGYVYKGVLPCGKQIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVELAGYCVSGSERMLVYEFVPNNTLEFHLHGEGSIFLGWTTRIKIALGSAKGLAYLHEDLHHTAHEVSDFGLAKVFPNNDSRISHLTTRVMGTFGYVAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAAGSRNESLVDWARPLLARALKEENFDNLVDPRLQKNCDTDEMVRMITCAAACVRHSSRLRPRMSQIVGALEGVVSLTDLVGDVTVENTPEHNWSKYLDYGDNQYQYDFKRF 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02769 604 MobiDBLite consensus disorder prediction 1 103 - -
Vimu10g02769 604 SUPERFAMILY Protein kinase-like (PK-like) 283 563 IPR011009 -
Vimu10g02769 604 MobiDBLite consensus disorder prediction 34 103 - -
Vimu10g02769 604 ProSiteProfiles Protein kinase domain profile. 305 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02769 604 MobiDBLite consensus disorder prediction 230 263 - -
Vimu10g02769 604 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 209 576 IPR047117 -
Vimu10g02769 604 Gene3D Phosphorylase Kinase; domain 1 267 380 - -
Vimu10g02769 604 Gene3D Transferase(Phosphotransferase) domain 1 381 575 - -
Vimu10g02769 604 MobiDBLite consensus disorder prediction 234 263 - -
Vimu10g02769 604 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Vimu10g02769 604 MobiDBLite consensus disorder prediction 12 26 - -
Vimu10g02769 604 FunFam Proline-rich receptor-like protein kinase PERK8 278 380 - -
Vimu10g02769 604 Pfam Protein tyrosine and serine/threonine kinase 309 562 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02769 Vimu-Chr10 39042048 39046990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02769 152 600 Trihelix Transcription Factor Family AT4G32710 48.195 7.30e-122 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu10g02769 PK_Tyr_Ser-Thr 9.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02769 - - vum:124823967 925.62