Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02753 ATGGAACCGAGGGAAACCATGTCGGATTCAGTTCCGCGGAAATTGGTCAGGCAATTGGATTTCACCGTCGTTTACAGAGATAATCCGCACCTGAAACTGCCTCCTCCGTCACCATCGCCGCCGCATTCACTTCTGCCGCTCTCATCGCATCCTCCGTTGCAGTTAAATTTGCAGACACCGGGGCAACGGCCGTGGTTATGTTCGGAGCCACAGGAGCAACAGCCCTGGCTACATTCACCGGGATCAAAGCTAGTTTCGCCGGTTTGTCAATTTCCGCAGCCGGTGCAGAAACTTCCGGTTAAGGTGTTGCCAGTGGTGAAGTCAGAGTCTCCTACATCACAACCTCGATTTAATGTGGAATTAAAGGACACGACACCAAAGAAACAGAAACAATGTAACTGCAAAAATTCTAGATGCCTCAAATTGTACTGTGAGTGTTTTGCAGCTGGGATCTATTGTGATGGTTGCAACTGTGTAAATTGTCATAATAATGTGGATAATGAGGCTGCCAGACAGGAGGCAGTTGGAATAACATTGGAAAGAAACCCAAATGCTTTCAGACCAAAAATTGCTAGCAGTCCGCAAGAACAACGAAACTCCAAGGAAAGTGAAGCTCAAGTTATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCTGGTTGCCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTACTGAAAGAAGAGCAATTTTTCACAGAGAGTATAATCTAGTTCACATCGAACAGGGAACTAATGCTGCTGTAACAGAAGTCCTTGGATCATCTGGCTATAGAAACCATATAACACCCAAGAGGAGAAAAATTCAAGAAACGTTTTCCGGAAAGTTAGCTGCGGATCAAACTGCTAACACAACTGCCCAATACCTACAGGAAACTGATCGTATGGCTTCCTCGTCTTCAAATCTGTCATATTCCTTTGTTTCTGACCATGTCAACACAAGAATTTCAGGGTTTTCAAGGTCTATGTACCGGTCGGTATTGGCAGATGTCCTCCAGCCACAAAATGTGAAGAATCTCTGCTCACTTTTTGTTATTCTCTCACGAGTATCTGCAAAGACTGATGCAGAAGCGGAAGGGAAAATAGATCGACAAACAAAAGCTGGGAACTCTAAAGCTTCCGTTGCTTCATCAGCTAAATCGCTACAGCAAACTAAAGATGGTCGCCAGCCCGTTTGTGTTGATCACGTGAATAAAGCTGTGGCAGATGCAGTTGATATTGCAAATTATAATAGGCCATTGTCACCAGAAACACTGGCATTGATGTGTGATGAACAGGCCAACATGTTTTTTGGAAATACTTCTGCCGATGGAGCTGCATATCAAAACATGATTCAAAAATCATTAAACTCTGATGGAAGCTCTGATGCTTACGGAGAGCAGGAAAGGCTTATAATGACCAAACTCTTGGATGTTCTTCGAGAACTCGTTACTCTTGGTAGCATAAAAGAAACGTGCTATTATTCGTCGACCAAGAAAGAACCCGCAGACCACGGCAATATTGGGGCTGAAACTGGCGTTGGAAGTGAAAAGAGAAATAGTAGCAATTGCATTGCAAATTACCCCATCCCATCGGTTACTAAAATATCCCAAACATTTATGCCATAA 1686 0.4342 MEPRETMSDSVPRKLVRQLDFTVVYRDNPHLKLPPPSPSPPHSLLPLSSHPPLQLNLQTPGQRPWLCSEPQEQQPWLHSPGSKLVSPVCQFPQPVQKLPVKVLPVVKSESPTSQPRFNVELKDTTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCVNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQEQRNSKESEAQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSTERRAIFHREYNLVHIEQGTNAAVTEVLGSSGYRNHITPKRRKIQETFSGKLAADQTANTTAQYLQETDRMASSSSNLSYSFVSDHVNTRISGFSRSMYRSVLADVLQPQNVKNLCSLFVILSRVSAKTDAEAEGKIDRQTKAGNSKASVASSAKSLQQTKDGRQPVCVDHVNKAVADAVDIANYNRPLSPETLALMCDEQANMFFGNTSADGAAYQNMIQKSLNSDGSSDAYGEQERLIMTKLLDVLRELVTLGSIKETCYYSSTKKEPADHGNIGAETGVGSEKRNSSNCIANYPIPSVTKISQTFMP 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02753 561 MobiDBLite consensus disorder prediction 28 51 - -
Vimu10g02753 561 MobiDBLite consensus disorder prediction 382 415 - -
Vimu10g02753 561 PANTHER TESMIN/TSO1-RELATED 32 500 IPR028307 -
Vimu10g02753 561 SMART CXC_2 127 167 IPR033467 -
Vimu10g02753 561 SMART CXC_2 210 251 IPR033467 -
Vimu10g02753 561 MobiDBLite consensus disorder prediction 393 414 - -
Vimu10g02753 561 MobiDBLite consensus disorder prediction 31 47 - -
Vimu10g02753 561 ProSiteProfiles CRC domain profile. 128 250 IPR005172 -
Vimu10g02753 561 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 213 247 IPR005172 -
Vimu10g02753 561 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 129 164 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02753 Vimu-Chr10 38905330 38909504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02753 109 511 CPP Transcription Factor Family AT4G29000 50.236 1.54e-125 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu10g02753 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02753 - K21776 gmx:100811459 767.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02753 10 38905330 38909504 Vimu10g02753 10 38905330 38909504 ECH