Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02742 ATGTGGCAGGTGAAAGAAAGAAAGCGTGTTTTTGAGATTGCACACGTGTTGGAACTGTTACTAGGAGGATGGTTATGTTATGTTGTTGTGTTGTGTTGTGTTGTGGTGATGGAGAATGTTGTTGAGCTGAGGTTGAGCTCCTTCGATAGGACAGCAACCATGGACAGGGTCATCGCCGGCAAGTTTAAGACTGGTCGGAAAATCGGAAGCGGTTCATTTGGAGAAATTTATATAGCCTCAAATATGGACACCTCGGAGATTGTTGCCATCAAGATGGAAAACAAGAGAACCAAACATCCACAACTATTGTATGAGGCAAAGTTATATAGCATTCTTCAAGGAGGAAGTGGTGTTCCATGTATGAAGTGGTGCGGTACTGATGGAGACAATAATGTTTTAGTTATTGATCTTCTGGGACGGAGTCTTGAAGACTTTTTTGTCTATTGCGGGAGGAAATTTTCATTAAAAACAGTTTTGATGTTGGCTGATCAGATGCTGACAAGAATAGAGTACCTGCATTCCAAGGGATTTTTGCATAGAGATATCAAACCAGATAATTTTCTTATGGGTCTTGGGAAGAAAGCAAATCAGGTTTATATTATTGATTTCGGACTAGCAAAAAGATATAGGGATCCAAACACAAATAAGCACATTCCTTACAGCCTTCCTTGGCAGGGTTTGAAAGCTGCCACCAAAAAGGAAAAATATGACAATATCTGTGACAAGAAGTTATCAACTCCCATTGAGTGGAAATGTGGAATAGATTTTGGTCATGGTAAGGAGAGTCCCCCCCTGCCCTTTTCTATTTCTTGTCAACAATGGGAGAGGAAAGGACTCTGTTGGCAAATTGAGTGTGAAATGGAAATTGGAGTGCTCTGCAAGTCATTTCCTGTGGAGTTTGCTACATACTTTCATTATTGCCAATCTTTGACATTTGATCAACACCCAGATTATGGATACTTGAAGCGCCTGTTTAGTGATTTGTTCAGACGAGAAGGATATGATTCCGACTATATATATGACTGGACCATCCTCAAATACCAGCAGTCTCAACAGACAAAGAAACAAAATCAATCATCTTCTTCAGCTGCATTGCCTAGCAATCTAGAACCAGCAGTTGTGGAAAACCCCAAAGGAGCCAATGATTCAACTCATGTTAATGTAACAAATATGTTAGCTAGTCTTGAACTCCCAAGTGCACGTGCGCAGCCTAAGCCATCTAATGCTCGGAATCTGGATGCCAAGATTCGGACTGAGAAACATGGTGTGAACAATATTCCACCTAGTTCCTCTGCCTTGCCCAAATCCTCTACAGGAAATGTCTCGAAACCAGAAAAGTCCACAGTAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATTCCCGTGTTTCAAGCAGCTGGATTCCTTCACTACGCCGAATTTCTTCCGCCAAATAG 1437 0.4148 MWQVKERKRVFEIAHVLELLLGGWLCYVVVLCCVVVMENVVELRLSSFDRTATMDRVIAGKFKTGRKIGSGSFGEIYIASNMDTSEIVAIKMENKRTKHPQLLYEAKLYSILQGGSGVPCMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYLHSKGFLHRDIKPDNFLMGLGKKANQVYIIDFGLAKRYRDPNTNKHIPYSLPWQGLKAATKKEKYDNICDKKLSTPIEWKCGIDFGHGKESPPLPFSISCQQWERKGLCWQIECEMEIGVLCKSFPVEFATYFHYCQSLTFDQHPDYGYLKRLFSDLFRREGYDSDYIYDWTILKYQQSQQTKKQNQSSSSAALPSNLEPAVVENPKGANDSTHVNVTNMLASLELPSARAQPKPSNARNLDAKIRTEKHGVNNIPPSSSALPKSSTGNVSKPEKSTVTSNLGRVFGSNSRVSSSWIPSLRRISSAK 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02742 478 MobiDBLite consensus disorder prediction 423 478 - -
Vimu10g02742 478 SMART serkin_6 62 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02742 478 Pfam Protein kinase domain 62 218 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02742 478 Gene3D Transferase(Phosphotransferase) domain 1 272 389 - -
Vimu10g02742 478 MobiDBLite consensus disorder prediction 417 478 - -
Vimu10g02742 478 SUPERFAMILY Protein kinase-like (PK-like) 57 342 IPR011009 -
Vimu10g02742 478 ProSiteProfiles Protein kinase domain profile. 62 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02742 478 Gene3D Transferase(Phosphotransferase) domain 1 139 222 - -
Vimu10g02742 478 PANTHER CASEIN KINASE-RELATED 221 376 - -
Vimu10g02742 478 Gene3D Phosphorylase Kinase; domain 1 53 138 - -
Vimu10g02742 478 ProSitePatterns Protein kinases ATP-binding region signature. 68 91 IPR017441 GO:0005524
Vimu10g02742 478 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02742 Vimu-Chr10 38782660 38788963 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02742 57 254 CBL-interacting serine-threonine protein kinases AT4G14580 25.243 1.27e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vimu10g02742 Pkinase 5.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02742 K08960 K08959 gmx:100792736 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02742 10 38782660 38788963 Vimu1g02045 1 28380584 28394277 PCT