Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02737 ATGTCTAACACCCTCAAGTTCAATCCCTTTAAGAAGCATTTGCTAATAATGTTCACCATGGTTCTTTCTCTCCCCTTCAATGTTCAATCTCAAGACAGGGAAGAGGAAGAACAGAACCTGCCACAACCCCCTCAAATCGTTCATCCAAGCAAGGGGATCGTGATAGCAGTGCTCGCCACCATGTTTGCCATCACAACTATCTTACTTTTATATGTCAAGTTCTGTCGAGTCAACGGTCGCCAACTTCTTACCCGAAACTCAAATCTCCAAAACTATCAGGGCCGATCTCGATCAAGTTCAAGAGTTTCTGGTATTGACAAAGAAGTGGTAAAAACCCTCCCTTTCTTCACGTTTTCATCCCTGAAGGGGTTCAAAGATGGCCTAGAATGCACTGTTTGTCTCTCCAAATTCGAGGACTCAGAGACTTTAAGACTGCTTCCGAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCCACATGCCCTCTCTGTAGACGCAGGGTTGAAGCAGGAGACATAAAGAACCTCAACTACTCCCTAAGCTCAAGGTTCCTCCGAGTTCCTTCCAATCTCACGGAGGATCTAAACCTTGAAATCTTCCTTCAGAGAGAGCCTTCTCATAGAGGGTCATCGAGAAGAGGCTTTAATGACGCGGGGAACTGCAAGAAACAAGAACTGTTTATCGGTGATGGAAGTGGCGGTGGTGGTGCCACAAAGTGGGACACAGATGTTCGTGTGACAAACCTTAAAATAGTTATCTCTGACGTTTTCACGAGGAGCAGGTGGAGTGATCTTAACTCTTCGGACCTGTTGTCGTTGAACAGCGAGATGCTTAATGATGTTAGCAGCAGGAGATTATGTTCCAGTTCTTCGGAATCCACCGAAGACAGCGGAAAGGTTCACGGAACTTGGCGTTTTAAGGAGGAAGAAAAGTGGTTTACGGAAGTGAATCATGGTGAGAAGAGGTGCATGTCTGAGATTGCCAATGTTCCGAGGTTTGCAGAAATGGGGAAGGAGAATAGGATCGGAGAAAGTGTTTGGTTGCCAATTGCACGAAGAACTATCCAATGGATTGCAAAACAAGAAAGGAATCCGGGAGAATTAGAACCGAAAACTCTAGCCTCAAATGTTTGA 1155 0.4537 MSNTLKFNPFKKHLLIMFTMVLSLPFNVQSQDREEEEQNLPQPPQIVHPSKGIVIAVLATMFAITTILLLYVKFCRVNGRQLLTRNSNLQNYQGRSRSSSRVSGIDKEVVKTLPFFTFSSLKGFKDGLECTVCLSKFEDSETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNYSLSSRFLRVPSNLTEDLNLEIFLQREPSHRGSSRRGFNDAGNCKKQELFIGDGSGGGGATKWDTDVRVTNLKIVISDVFTRSRWSDLNSSDLLSLNSEMLNDVSSRRLCSSSSESTEDSGKVHGTWRFKEEEKWFTEVNHGEKRCMSEIANVPRFAEMGKENRIGESVWLPIARRTIQWIAKQERNPGELEPKTLASNV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02737 384 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Vimu10g02737 384 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 370 - -
Vimu10g02737 384 CDD RING-H2_EL5-like 129 172 - -
Vimu10g02737 384 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 180 IPR013083 -
Vimu10g02737 384 SMART ring_2 130 171 IPR001841 -
Vimu10g02737 384 SUPERFAMILY RING/U-box 110 176 - -
Vimu10g02737 384 Pfam Ring finger domain 129 172 IPR001841 -
Vimu10g02737 384 FunFam RING-H2 finger protein ATL43 105 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02737 Vimu-Chr10 38756225 38758012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02737 39 371 C3H Transcription Factor Family AT2G20030 38.950 1.14e-66 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02737 K10664 - gmx:100816668 501.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02737 10 38756225 38758012 Vimu1g02044 1 28326912 28327467 PCT