Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02730 ATGAGAGTTTCAGCGGAGAAGACGATGTCGTTGGAGACCGAGGCCGGGCGAGAGAGCAAGAAGATAAAGCGCATTCGCGACTCGAGCAAGCACCCAGTGTACCGTGGCGTGCGGATGCGGAACTGGGGGAAGTGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAGTCACGGATATGGCTAGGCACATTCCCGACGCCGGAGATGGCGGCGAGAGCGCACGACGTGGCCGCCCTCAGCATCAAGGGCTCCGCCGCCATTCTGAACTTCCCCCACCTGGCGAACTCCCTCCCACGCCCGGCCTCCCTGGCGGCGCGCGACGTCCAGGCGGCGGCGGCGAAGGCGGCCCACATGGAGCCATCCTCCCTCTCGTCCTTGGTGTCGGCAATGGACCTGTCCTCTGCCTCAGACGAGTTGACTCAGATAGTTGAACTCCCGTCCCTGGAAAGCACCGATGACGGGTGCGTGGAGTTGGAAAAGGAGTTCGTTTTCGTGGACTCGGTGGACACATGGATGTATCAGCCAGCAGCGTTTGATTTTGACGCGGAACGAGACATTGCCTTGGAGGGTCTGGTGTGGAATTACTAG 585 0.6137 MRVSAEKTMSLETEAGRESKKIKRIRDSSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHLANSLPRPASLAARDVQAAAAKAAHMEPSSLSSLVSAMDLSSASDELTQIVELPSLESTDDGCVELEKEFVFVDSVDTWMYQPAAFDFDAERDIALEGLVWNY 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02730 194 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Vimu10g02730 194 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Vimu10g02730 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 18 151 - -
Vimu10g02730 194 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Vimu10g02730 194 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Vimu10g02730 194 MobiDBLite consensus disorder prediction 1 20 - -
Vimu10g02730 194 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Vimu10g02730 194 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Vimu10g02730 194 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Vimu10g02730 194 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Vimu10g02730 194 FunFam Ethylene-responsive transcription factor 2 32 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02730 Vimu-Chr10 38710235 38713063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02730 4 174 AP2-EREBP Transcription Factor Family AT5G11590 64.737 1.16e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu10g02730 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02730 K09286 - gmx:100813069 289.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02730 10 38710235 38713063 Vimu10g02730 10 38710235 38713063 ECH