Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02718 ATGGAAGCACAAGAGTTCTTCCAGAACACCTTTTACCCTCAATTCCCCTCCGACAACATCACTCCCTCTAACACCAACGCCTCCACCACTGACCACTTCATCGTCGAAGACTTCTTCGACTTCTCAAACAGCGACGAGGCTCCTCTCATCGACACCACCTTTGACTCTCTCCCCACTGACCACTCTTCCACCCTAACTAACCTCGACACCACCACCAACAACTCCAATTTCTCCGCCACCGATGCTCATTTCTCCGGTGACCTTTCCCTCCCGTATGATGATCTTGCTGAATTGGAGTGGCTGTCGAAATTCGCCGAGGAATCCTTTTCCAGTGAGGATTTACAGAAGCTGCAGCTGATATCCGGTGCCGGAGTGCAAAAGGACACCGCATCGGAAACGCGAGACCCGAACCCGGCTCTGTTCAACCCGCAAGTATCGGTTCGGGGGAAGGCGAGGAGTAAGCGGACTCGTGGGCCACCATGCAATTGGTCGTCTCGACTGGTTGTCCTGTCTCCGAACACGATGTCTTCGGAGTCTTCTCATTCAGACAGCGGTAAGAAGGTGGCCCCGCGGAGGAGGGATGTGAGCGAAGGCAGCAGTGAGGGCAGGAAGTGTCTGCATTGCGCAACGGACAAAACGCCACAGTGGCGGACGGGTCCCATGGGTCCTAAAACACTTTGCAATGCATGCGGCGTGAGGTACAAGTCCGGCAGGCTGGTGCCGGAGTACAGGCCCGCCGCAAGCCCAACCTTCGTGCTGACAAAACACTCGAACTCGCACCGGAAAGTGTTGGAGCTGCGACGGCAGAAGGAAATGGTGAGGGTCCAGCAGCAGCAATTGCTCCATCTGCAACATCAGCAGAACATGATGTTCGATGTTCCATCCAACGGTGAGGATTATTTGATCCATCAACAATGGGCTCCGACTTCCCACACCTCATCTAATCTCCTGCTAGACTAG 960 0.5469 MEAQEFFQNTFYPQFPSDNITPSNTNASTTDHFIVEDFFDFSNSDEAPLIDTTFDSLPTDHSSTLTNLDTTTNNSNFSATDAHFSGDLSLPYDDLAELEWLSKFAEESFSSEDLQKLQLISGAGVQKDTASETRDPNPALFNPQVSVRGKARSKRTRGPPCNWSSRLVVLSPNTMSSESSHSDSGKKVAPRRRDVSEGSSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRVQQQQLLHLQHQQNMMFDVPSNGEDYLIHQQWAPTSHTSSNLLLD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02718 319 MobiDBLite consensus disorder prediction 127 203 - -
Vimu10g02718 319 MobiDBLite consensus disorder prediction 166 183 - -
Vimu10g02718 319 FunFam GATA transcription factor 195 281 - -
Vimu10g02718 319 PIRSF Txn_fac_GATA_plant 1 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Vimu10g02718 319 ProSitePatterns GATA-type zinc finger domain. 205 230 IPR000679 GO:0006355|GO:0043565
Vimu10g02718 319 SMART GATA_3 199 249 IPR000679 GO:0006355|GO:0043565
Vimu10g02718 319 PANTHER GATA TRANSCRIPTION FACTOR 22 278 - -
Vimu10g02718 319 MobiDBLite consensus disorder prediction 184 203 - -
Vimu10g02718 319 CDD ZnF_GATA 204 251 IPR000679 GO:0006355|GO:0043565
Vimu10g02718 319 Gene3D - 198 249 IPR013088 GO:0006355|GO:0008270
Vimu10g02718 319 Pfam GATA zinc finger 205 238 IPR000679 GO:0006355|GO:0043565
Vimu10g02718 319 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 263 - -
Vimu10g02718 319 ProSiteProfiles GATA-type zinc finger domain profile. 199 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02718 Vimu-Chr10 38617936 38619439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02718 27 303 C2C2-Gata Transcription Factor Family AT4G32890 50.000 8.59e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vimu10g02718 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02718 - - gmx:100776588 471.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02718 10 38617936 38619439 Vimu10g02718 10 38617936 38619439 ECH