Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02715 ATGACTCAACAAGGCCTTAAATTTTCGCAGTTAATAATTTCAGAGGGGTGTAGGGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGGTGTGAACAGGAAGCTGACAGCAATGAATAAGTTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTGGTATATGAAAACAGCTTTTTCCGCCAACAGACTCAGAACGCTACGGTTGCCACGACGGACACGAGCTGTGAGTCGGTGGTGACGAGCGGTCAGCGGCACTTGACGCCCCAGCATCCGCCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCCGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCCGCACGTGCCTGCGGCCTTGTGGGTCTAGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACCGTGGACGTTCTAAATGTCATGTCCACTGGAAATGGTGGAACCATTGAGCTACTTTACATGCAGTTGTATGCGCCAACAACTTTAGCACCTGGTCGCGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTAGTGGTCTGTGAAAGATCACTCAACAATACTCAGAATGGTCCTGCTATGCCTCCGGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGGTATCTGATAAGACCTTGCGAAGGAGGGGGGTCCATTATCCATATTGTTGATCATATGGTTCTAGAGCCATGGAGTGTTCCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGTTGCTAGCTCAGAGGACTACTATGGCGGCCCTACGTCATTTGAGGCAGATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACAGGATGGGGAAGAAGGCCTGCAGCTTTACGTGCTCTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTAAATGGCTTTGCCGATGATGGCTGGTCCATGTTAGAAAGTGATGGCATAGATGATGTCACCCTTCTGGTGAATTCCTCACCTAGCAAGATGATGGGAGCTAACCTTGGCTATAACAACAATGGATTTCCTTCTATGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTACAGAATGTTCCTCCAGCAATTCTTCTTAGATTCTTGAGGGAGCACCGGTCAGAATGGGCAGACAGCAGCATTGATGCCTACTCAGCTGCTGCCATTAAAGCCGGTCCCTGTAGCTTGCCAGGGGCCCGACCAGGAGGAGGTTTTGGGGGTCAGTTCATGGAGGTTATTAAGCTTGAAAACATGGGCTACTATAGGGACGACATGACTATACCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGACGAGCATGCAGTTGGCACCAGCGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGGTTTCGCATTATTCCTCTTGATTCTAGCTCAGATGCTGCTAGTCCAAACCGGACACTTGATCTGGCTTCTGCACTTGAGGTTGGAACCACAACAAACAAAGCAGCCGGTGATAACTCGGGTCATTCTGGGAGCACAAAATCTGTGATGACAATAGCATTCCAATTTGCATTTGAAGTCCACCTTCAAGAGAGCATAGCAACCATGGCCAGACAGTATGTTCGTAGTATCATTGCCTCTGTTCAGAGGGTTTCATTAGCACTTTCTCCCTCCCGTTTTGGTTCTCACAATGCATTTCACTTACCACCTGGCACTCCCGAGGCTCAAACACTTGCTCGATGGATCTCTAACAGCTATAGGTTCTATCTAGGGGTAGAACTTCTTAAATGTGAAGGCAGTGAATCCATTCTGAAGTCTCTTTGGCATCACTCAGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTTACGTTTGCAAATCAAGCTGGACTTGACATGCTCGAAACAACTTTGGTTGCACTTCAAGACATAACCCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACCCTGTGCAGCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGAATCTGTTTGTCGAGCATGGGTAGACCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGAGATTTATGGCTACTTTCAACCTAAAATTATTATTATTATTATTATTATTATTTTTAGCAACAAGATAAAGGGTAGAAAGAAGAAAGGGGGTGTAGGGTTCTTTGGGTGTGAGTTGCGGCAGAGAATTAGGAACACTCAAATTCTCATTGTGACCATGGATTGTGAAAGAGGGCAAAAGAGAAATGCTCCGTGTTGA 2448 0.4714 MTQQGLKFSQLIISEGCREKQRKEASRLQGVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATVATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGANLGYNNNGFPSMSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARPGGGFGGQFMEVIKLENMGYYRDDMTIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSSDAASPNRTLDLASALEVGTTTNKAAGDNSGHSGSTKSVMTIAFQFAFEVHLQESIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWISNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKEIYGYFQPKIIIIIIIIIFSNKIKGRKKKGGVGFFGCELRQRIRNTQILIVTMDCERGQKRNAPC 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02715 815 Gene3D - 141 322 IPR023393 -
Vimu10g02715 815 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 17 751 IPR044830 GO:0003700
Vimu10g02715 815 SUPERFAMILY Bet v1-like 106 317 - -
Vimu10g02715 815 Coils Coil 32 59 - -
Vimu10g02715 815 ProSiteProfiles START domain profile. 97 325 IPR002913 GO:0008289
Vimu10g02715 815 SMART START_1 106 316 IPR002913 GO:0008289
Vimu10g02715 815 CDD bZIP 17 54 - -
Vimu10g02715 815 CDD START_ArGLABRA2_like 101 316 - -
Vimu10g02715 815 Pfam MEKHLA domain 630 750 IPR013978 -
Vimu10g02715 815 Pfam START domain 107 315 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02715 Vimu-Chr10 38561564 38576573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02715 17 766 Homeobox Transcription Factor Family AT4G32880 77.344 0.0 1210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02715 K09338 - gmx:100815727 1391.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02715 10 38561564 38576573 Vimu10g02715 10 38561564 38576573 ECH