Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02714 ATGGCCAAAGGATCTTCAGAGACAAAATCCATGACATTTATATGCCTCTTCTTGTTCATGCTCAACTTCCACTCATCCCACGGAGATCCAAAAGAGGTTCTGCTTTTATTATCCTTCAAAGCTTCCATCGATGACCCGCTTCACTTTCTTTCCAACTGGGAAACTTCCTCTGCCACTTTATGCAGGTGGCATGGCATCACCTGCGACAACAACGTTAACTCTTCCCACGTTAACGCTGTGGTGCTCTCGGGAAAAAACATGACCGGCCAGGTCTCCTCTATTTTTCAACTTCCATACGTCGCAAACATCGACCTTTCCAATAACCAGTTTGTTGGGGAAATCACTTTTAACTACTCTTTCAATTCTCTGTCTCTACTTCGTTACCTTAACCTCAGCAACAACAACTTCACTGGTTCTTTGCCTCAACCATTGTTTTCTGTGCTTTTCTCAAACCTTGAAACTCTGGATCTCTCCAACAACATGTTTTCAGGGAACATACCTCACCAAATTGGATTGCTTTCCAGCCTAACGTATCTTGATCTTGGAGGAAACCTTTTGGTAGGAAAGATTCCGAATTCCATCACCAACATGACCACTTTGCAGTACCTTACGTTGGCGTCAAACCAGTTAGTGGATAAGATACCAGAAGAAATTGGCCAGATGAAGAGCTTGAAGTGGATTTACATGGGCTACAACAACCTTTCAGGTGAGATACCAATTAGCATTGGAGAGTTACTCTCTTTGAATCATCTCGACCTTGTCTACAACAACCTCACTGGACCTATTCCACAATCTCTCGGACACCTCACTGAGCTTCAATATCTCTTTCTTTATCAAAACAAACTGAGTGGTCCAATTCCCCAATCCATTTTCGAACTGAAAAAGCTCATTTCACTCGATCTAAGTGATAACTCTCTTTCGGGTTTGATTTCTGAGCGCGTGGTTCAGCTCCAGAGGCTGGAGATTCTCCACCTTTTCTCAAACAACTTCACTGGGAAGATTCCAAAGGGTGTTGCATTTTTGCCTCGGCTCCAGGTCCTTCAGCTATGGTCAAATGGATTAATAGGTGAGATTCCTGAGGAGCTTGGAAAACATAGCAACCTCACCGTGTTGGACCTCTCCACCAACAACCTCGCAGGGAAGATTCCAGATAACATATGCCACTCAGGTAGTCTTTTCAAGCTGATCCTCTTCTCCAACTATTTCGAAGGAGAAATCCCAAAGAGCTTAACCTCTTGCAGAAGCCTTCGCCGAGTGAGACTACAAAACAACAAGTTCTCGGGGAAATTACCACCGGAATTAACCACACTGCCTCAGGTATACTTCTTGGATATCTCTGGAAACCAACTTTCTGGAAGGATCAATGACAGAAAATGGAACATGCCGTCGCTTCAAATGCTCAGTTTGGCCAACAACAACTTCTCAGGAGAACTCCCTACCTCTTTCGGGACACAAATTCTTGAGGACCTGGACTTATCAAACAACCAATTATCAGGTTCTATTCCTCTAGATTATAGAAGCTTATTAGAGCTGGTGGAATTGAAGCTCAGCTATAACAAACTCTTTGGTAACGTTCCAGAAGAAATTTGCTCGTGCAAGAAGCTTGTGGCCTTAGATTTGAGTCACAACCAGCTCAGTGGTGAAATTCCGATGAAATTCTCGGAGATGCCGGTTCTCGGCCTCCTTGACCTGTCAGAAAACCAATTCTCCGGCGAGATTCCGCAGGATTTGGGCAGCACCGAGTCTCTCGTGCAGATTAACATTTCACACAACCATTTTCGTGGAAGTTTACCTTCTACCGGTGCTTTCCTCGCCATCAACGCAAGTGCAGTCACCGGCAACAACCTTTGTGACCGTGATGATGACTCTTCAAGCGGGTTGCCACTGTGCAAAAGCAATAACCAGAACCCAACTTGGCTCTTCATCATGCTGTGTTTTCTACTAACACTGATTGCGTTCGCAGCAGCTTCTTTACTCGTCTTTTATGTTCACAAGAGAAAGAGCTTCTCGGAAGTGCGAAAAGTGGAAAACCAAGACGGAACCTGGGAAGTGCAGTTCTTTTGTGCCAAAGTAGCGAGGTTGATGAAGGTAGATAACGTTTTCTCTACGGTTAAAGAGGGAAGAGTTGTGTCCAAAGGAAGGAACTGGGTTTCCTACGAAGGGAAGTGCATGGAGAACGGCATGCAGTTCACGGTGATGGAAATCAGTGAGCTGAATTCTCTTTCGACGAGTATGTGGGAAGAAACAGTGAAGGGTGGAAAGGTGCGTCACCCCAATATCTTCAATCTTGTTGGGACGTGTAGGTGTGGGAAGAGAGGATACTTGGTGTACGAACACGAGGAGGGTAAGAAACTAAGCGAGATTGTGAACAGTTTGAGTTGGAAACAGCGTTGCAAGATTGCTGTTGGCGTTGCAAAAGCGATTAAATTCCTGCATTCTCACGCTTCATCCATGGTTTTGGTGGGAGAGGTTGCAAGGGAGATAGTTAGGGTCGACATGAAAGGTGTCCCTCGCCTTAAGGTCACCCCTCCCATAATGACATGTTTGGATGTCAAGGGTATCACTTCTTCGACATACCTTGCCCAAGAAGCAAGAGAAAGGAAAAATGTGACAGAGAAGAGTGAGATATATGGGTTGGGAGTTATGCTGATCGAACTATTGACGGGAAGGAGCGGCATAGACATAGAAGCAGGAAATGGCATGCAGAAGACAATTGTGGAGTGGGCCCGATATTGCTACTCTGATTGTCAAGTTGACACGTGGATTGATCCTGTGATGAAAGGTGGAGATGCATTGAGGTATGAGAAGGAGATGGTTGAGATGATGAATCTAGCGCTGCACTGTACCACAACCGATCCGACTGCAAGGCCATGTGCAAGAGATGTAGTGAAAGCCCTAGAGAGTTTTCAGAGAACTAGTTTTTGTTGA 2928 0.4515 MAKGSSETKSMTFICLFLFMLNFHSSHGDPKEVLLLLSFKASIDDPLHFLSNWETSSATLCRWHGITCDNNVNSSHVNAVVLSGKNMTGQVSSIFQLPYVANIDLSNNQFVGEITFNYSFNSLSLLRYLNLSNNNFTGSLPQPLFSVLFSNLETLDLSNNMFSGNIPHQIGLLSSLTYLDLGGNLLVGKIPNSITNMTTLQYLTLASNQLVDKIPEEIGQMKSLKWIYMGYNNLSGEIPISIGELLSLNHLDLVYNNLTGPIPQSLGHLTELQYLFLYQNKLSGPIPQSIFELKKLISLDLSDNSLSGLISERVVQLQRLEILHLFSNNFTGKIPKGVAFLPRLQVLQLWSNGLIGEIPEELGKHSNLTVLDLSTNNLAGKIPDNICHSGSLFKLILFSNYFEGEIPKSLTSCRSLRRVRLQNNKFSGKLPPELTTLPQVYFLDISGNQLSGRINDRKWNMPSLQMLSLANNNFSGELPTSFGTQILEDLDLSNNQLSGSIPLDYRSLLELVELKLSYNKLFGNVPEEICSCKKLVALDLSHNQLSGEIPMKFSEMPVLGLLDLSENQFSGEIPQDLGSTESLVQINISHNHFRGSLPSTGAFLAINASAVTGNNLCDRDDDSSSGLPLCKSNNQNPTWLFIMLCFLLTLIAFAAASLLVFYVHKRKSFSEVRKVENQDGTWEVQFFCAKVARLMKVDNVFSTVKEGRVVSKGRNWVSYEGKCMENGMQFTVMEISELNSLSTSMWEETVKGGKVRHPNIFNLVGTCRCGKRGYLVYEHEEGKKLSEIVNSLSWKQRCKIAVGVAKAIKFLHSHASSMVLVGEVAREIVRVDMKGVPRLKVTPPIMTCLDVKGITSSTYLAQEARERKNVTEKSEIYGLGVMLIELLTGRSGIDIEAGNGMQKTIVEWARYCYSDCQVDTWIDPVMKGGDALRYEKEMVEMMNLALHCTTTDPTARPCARDVVKALESFQRTSFC 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02714 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 327 626 - -
Vimu10g02714 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 780 975 - -
Vimu10g02714 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 668 779 - -
Vimu10g02714 975 Pfam Leucine rich repeat N-terminal domain 31 69 IPR013210 -
Vimu10g02714 975 Pfam Leucine Rich repeat 531 548 IPR001611 GO:0005515
Vimu10g02714 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 148 239 - -
Vimu10g02714 975 Pfam Protein tyrosine and serine/threonine kinase 741 966 IPR001245 GO:0004672|GO:0006468
Vimu10g02714 975 SUPERFAMILY L domain-like 314 630 - -
Vimu10g02714 975 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
Vimu10g02714 975 Gene3D Ribonuclease Inhibitor 189 290 IPR032675 -
Vimu10g02714 975 Pfam Leucine Rich Repeat 126 143 IPR001611 GO:0005515
Vimu10g02714 975 Pfam Leucine Rich Repeat 175 196 IPR001611 GO:0005515
Vimu10g02714 975 Gene3D Phosphorylase Kinase; domain 1 663 779 - -
Vimu10g02714 975 FunFam Leucine-rich repeat receptor protein kinase EMS1 240 326 - -
Vimu10g02714 975 ProSiteProfiles Protein kinase domain profile. 704 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02714 975 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 31 147 - -
Vimu10g02714 975 SMART LRR_typ_2 508 532 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 123 147 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 341 365 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 269 293 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 149 173 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 197 221 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 556 580 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 366 389 IPR003591 -
Vimu10g02714 975 SMART LRR_typ_2 461 484 IPR003591 -
Vimu10g02714 975 SMART serkin_6 662 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02714 975 SUPERFAMILY L domain-like 43 354 - -
Vimu10g02714 975 PRINTS Leucine-rich repeat signature 487 500 - -
Vimu10g02714 975 PRINTS Leucine-rich repeat signature 532 545 - -
Vimu10g02714 975 Gene3D Ribonuclease Inhibitor 292 624 IPR032675 -
Vimu10g02714 975 Pfam Leucine rich repeat 342 401 IPR001611 GO:0005515
Vimu10g02714 975 SMART LRR_sd22_2 269 295 - -
Vimu10g02714 975 SMART LRR_sd22_2 484 505 - -
Vimu10g02714 975 SMART LRR_sd22_2 365 388 - -
Vimu10g02714 975 SMART LRR_sd22_2 173 199 - -
Vimu10g02714 975 SMART LRR_sd22_2 508 527 - -
Vimu10g02714 975 SMART LRR_sd22_2 149 168 - -
Vimu10g02714 975 SUPERFAMILY Protein kinase-like (PK-like) 706 971 IPR011009 -
Vimu10g02714 975 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 393 967 - -
Vimu10g02714 975 Gene3D Transferase(Phosphotransferase) domain 1 780 974 - -
Vimu10g02714 975 ProSiteProfiles Leucine-rich repeat profile. 151 173 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02714 Vimu-Chr10 38556520 38561024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02714 16 967 Receptor kinase-like Gene Family AT2G25790 51.194 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Vimu10g02714 PK_Tyr_Ser-Thr 4.1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02714 - - gmx:100777118 1606.65