Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02705 ATGCCTGAGCTGCGTACCCGAACTCGCAGAAACCGACTCGTAGACAACGCAAACGCTATCCCGATCATTCAGCCAGCCTCGCCGGCGACCGCCAGAGCTCGACGGAGGAAGACATCCGCCGCGCCTGCCCGAACGCGGAGGAATCGGAGACAGAACGATGCGATCGCCGCCGCCGATGAAGTCGTGAACGATTACGCTGGTGCTGCTTGCGGAGCCAGAAATAGAAATATAAATTTAAAATACAAGCTGGGAGAGAAAGAGAATAACAATAATAAAATTTCGGTTAGGGTTTTTGAAGAGGAAGACATGGATGAAGACGATAGTCGTGGCCGTAGCGCAGATAAGGCTCCGGGAGCTGAAGATGAAGGCAGCACTGCCCCTCTTCCGGAGAAGGTTCAAGTTGGTGGTTCTCCTTTGTATAGAATTGAGAGAAAACTTGGGAAGGGAGGATTTGGGCAAGTCTATGTTGGTCGGCGGATAGGAGTTACGAATTCTAGCGAACGGACTGGTGCCGGTGCTGTTGAGGTAGCTTTAAAATTTGAACATAGAAGCAGCAAGGGGTGCAACTATGGACCACCATATGAATGGCAGGTTTACAATGCATTAGGCGGTAGTCATGGTGTTCCACGAGTACATTTCAAGGGACGGCAAGGTGACTACTATATTATGGTAATGGATATGCTTGGTCCTAGTCTGTGGGATGTTTGGAATAACAACTCTCACACCATGTCTACTGAAATGGTAGCATGTATTGCAATTGAGGCTATCTCCATATTAGAGAAGATGCATTCTAGAGGATATGTGCATGGTGATGTAAAGCCTGAGAATTTTTTGCTTGGACCCCCAGGAACTCCAGATGAAAAGAAGTTGTTTCTGGTTGATCTTGGGTTAGCAACTCGGTGGCGTGATAATTCGACTGGCCTTCATGTTGAATACGATCAGCGTCCAGATGTTTTTAGGGGCACAGTTCGTTATGCTAGTGTGCATGCTCATCTTGGTAGAACAGGTAGCAGGAGAGATGACTTGGAATCTCTTGCTTATACTCTTGTGTTCCTTCTTCGGGGTCGGCTTCCCTGGCAAGGATATCAGGGGGAAAATAAAGGGTTTCTTGTCTGCAAAAAAAAGATGGCCACCTCTCCAGAAACATTGTGCTGCTTTTGTCCTCAACCTTTCCGCCAGTTTGTTGAATATGTAGTGAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATATATATCCCTCTTTGATGGAATCGTGGGCCCAAATCCAGATATCAGGCCAATAAACACCGAGGGTGCTCAGAAGGTTGGCCATAAGAGGGGGCGTTTGACCATGGAAGATGATGATGATGAACAGCCTAAAAAAAAGGTTCGAATGGGAATGCCTGCTACACAATGGATTAGTGTTTACAATGCTCGTCGACCAATGAAGCAAAGGTATCATTATAATGTCGCCGATGTGCGGTTAGCCCAACACATTGATAAAGGGAATGAAGATGGTTTATTTATCAGCAGTGTGGCTTCTTGTACTAATCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACTGCACAAGTTTATGAACTCTCTTCCTGCTTTCTTCATAAGGAATGGATTATGGAACAATGGGAAAATAATTATTACATTAGTGCCATAGCTGGAGCTCATAATGGATGCTCATTGGTTGTAATGTCTAAAGGTACCCAGTATGTACAGCAATCCTATAAAGTCAGTGATTCGTTTCCGTTTAAGTGGATCAACAAAAAATGGAGAGAAGGATTTTATGTAACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCACGTGGGGCTGGTTATTCTGATCAGGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGACCAGGCTGCATTTGTTCTTAGTGTCCCAAGAAGAAAACCAACTGATGAAACTCAAGAGACACTCCGAACATCTGCTTTTCCTAGCGCTCATGTTAAGGATAAATGGGCAAAGAATCTCTATATTGCATCTATTTGCTATGGGAGAACAGTGTCATAA 2112 0.4489 MPELRTRTRRNRLVDNANAIPIIQPASPATARARRRKTSAAPARTRRNRRQNDAIAAADEVVNDYAGAACGARNRNINLKYKLGEKENNNNKISVRVFEEEDMDEDDSRGRSADKAPGAEDEGSTAPLPEKVQVGGSPLYRIERKLGKGGFGQVYVGRRIGVTNSSERTGAGAVEVALKFEHRSSKGCNYGPPYEWQVYNALGGSHGVPRVHFKGRQGDYYIMVMDMLGPSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHSRGYVHGDVKPENFLLGPPGTPDEKKLFLVDLGLATRWRDNSTGLHVEYDQRPDVFRGTVRYASVHAHLGRTGSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPETLCCFCPQPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPINTEGAQKVGHKRGRLTMEDDDDEQPKKKVRMGMPATQWISVYNARRPMKQRYHYNVADVRLAQHIDKGNEDGLFISSVASCTNLWALIMDAGTGFTAQVYELSSCFLHKEWIMEQWENNYYISAIAGAHNGCSLVVMSKGTQYVQQSYKVSDSFPFKWINKKWREGFYVTAMATAGTRWAIVMSRGAGYSDQVVELDFLYPSEGIHRRWDNGYRITSTAATWDQAAFVLSVPRRKPTDETQETLRTSAFPSAHVKDKWAKNLYIASICYGRTVS 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02705 703 MobiDBLite consensus disorder prediction 93 134 - -
Vimu10g02705 703 MobiDBLite consensus disorder prediction 437 457 - -
Vimu10g02705 703 CDD STKc_CK1 140 416 - -
Vimu10g02705 703 ProSiteProfiles Protein kinase domain profile. 140 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02705 703 PANTHER CASEIN KINASE-RELATED 140 668 - -
Vimu10g02705 703 SUPERFAMILY Protein kinase-like (PK-like) 140 420 IPR011009 -
Vimu10g02705 703 Gene3D Transferase(Phosphotransferase) domain 1 108 465 - -
Vimu10g02705 703 MobiDBLite consensus disorder prediction 28 52 - -
Vimu10g02705 703 FunFam casein kinase 1-like protein HD16 113 459 - -
Vimu10g02705 703 Pfam Protein kinase domain 140 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02705 703 SMART serkin_6 140 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02705 703 ProSitePatterns Protein kinases ATP-binding region signature. 146 179 IPR017441 GO:0005524
Vimu10g02705 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 267 279 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02705 Vimu-Chr10 38474826 38478938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02705 235 416 MAP Kinase Kinase Kinase AT5G50180 25.000 1.75e-08 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Vimu10g02705 Pkinase 1.9e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02705 - - gmx:100779382 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02705 10 38474826 38478938 Vimu10g02705 10 38474826 38478938 ECH
Vimu10g02705 10 38474826 38478938 Vimu1g02045 1 28380584 28394277 PCT