Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02701 TTGGCTCAGCAGCAGTGGTTAGATGAGCAGGGCAATATTGACTCTTCAACCAAACGCGGGGAATCTGCAAAGCTTCTTTTAAAAATCTTCACTTCAATCTTCCGCCAAGTCAACATGATGTGGCTCAATAGGCATAGACACAATATTACGACTCTGTACAAAGTAAGTTGTGGAAATCATTGCTTGTATTGCATATGTGGATACACTGAACATGATTTTGATTTCATTCTCACTGTCATACAGAAGTTGTTGCCAGTGATCATGTCGAGCATTTCCTTGAAGGAGAATGGTGGTGAGGTTTCTGCCACGAAGGATTATACCAATGGTGGTGGTGTGAGGGACTTGTATGGTGAGGATAGCGCCACTGAGGACCATCTTATCACTCCATGGACCTTCTCTGTGGCCAGTGGATACAGTTTGCTGAGAGATCCACGCTACAACAAAGGGCTGGCCTTTACTGAGGGAGAGAGAGATGCTCATTACTTGCGTGGCCTTTTACCCCCAGCTGTCCTCAATCAGGAACTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGATGTTCCTCTGCATAGGTACATGGCCATGATGGATCTCCAGGAGAGGAATGAAAGGCTATTCTACAGGCTTCTGATCGATAATGTTGAGGAACTGCTTCCGGTTGTATACACTCCAACGGTTGGAGAAGCATGTCAAAAATACGGAAGCATTTTTAGGCGTCCTCAGGGTCTATATATCAGTTTGAAAGAAAAGGGAAAGATCCTTGAAGTACTGAAAAACTGGCCAGAAAAGAGTATTCAAGTTATTGTTGTGACCGATGGTGAGCGTATATTAGGACTTGGAGATCTTGGCTGCCAGGGAATGGGAATTCCTGTTGGGAAACTTTCTCTCTATACTGCTTTAGGAGGTGTTCGCCCTTCGTCCTGCTTGCCTATTACCATTGATGTTGGCACAAACAACGAGAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAAAGGCGTGCAACTGGGAAGGAATATGCGGAGCTTCTAGACGAGTTTATGCGCGCAGTTAAGCAGAACTATGGAGAGAAAGTTCTCATACAGTTTGAGGATTTCGCCAATCATAATGCATTTGATCTGCTGGCAAAATACAGTTCATCTCATCTTGTTTTTAACGATGATATCCAGGGCACGGCATCTGTTGTGTTAGCAGGATTGCTTGCATCCCTGAAATTAGTTGGGGGAACCTTAGCTGACCACACCTTCTTGTTCTTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATTGCTCTTGAGATTTCAAAGCAGACAAATGCTCCAGTGGAAGAGACCCGAAAGAAGATCTGGCTTGTGGATTCAAAGGGACTTATTGTTAGCTCTCGTCTGGAATCACTTCAGCACTTCAAAAAGCCTTGGGCACATGAGCATGAACCTGTGAAGGGGCTACTAGATGCTGTCAAGGCAATCAAGCCAACCGTTTTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAACCATGGCATCCTTGAATGAGAAACCACTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTACACATGGAGCAAGGGTAAAGCAATCTTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAACTTTTTGTTCCTGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGCTTGGGATTGATCATCTCTGGTGCAATCCGTGTGCGTGATGAGATGCTCCTGGCAGCATCCGAAGCTTTGGCTGCACAAGTATCAGAGGAGAACTATGATAAGGGGCTGATTTACCCTCCATTCTCAAACATCAGGAAGATATCAGCCCACATTGCGGCTAAAGTGGCGGCTAAGGCATATGATCTAGGTCTGGCTTCTCATCTGCCTCGACCAAAGGATCTTGTTAAATATGCAGAAAGTTGCATGTACAGCCCCGGCTACCGAAGCTACCGTTGA 2031 0.4535 MAQQQWLDEQGNIDSSTKRGESAKLLLKIFTSIFRQVNMMWLNRHRHNITTLYKVSCGNHCLYCICGYTEHDFDFILTVIQKLLPVIMSSISLKENGGEVSATKDYTNGGGVRDLYGEDSATEDHLITPWTFSVASGYSLLRDPRYNKGLAFTEGERDAHYLRGLLPPAVLNQELQEKRLMHNLRQYDVPLHRYMAMMDLQERNERLFYRLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQRRATGKEYAELLDEFMRAVKQNYGEKVLIQFEDFANHNAFDLLAKYSSSHLVFNDDIQGTASVVLAGLLASLKLVGGTLADHTFLFLGAGEAGTGIAELIALEISKQTNAPVEETRKKIWLVDSKGLIVSSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVETMASLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFSNIRKISAHIAAKVAAKAYDLGLASHLPRPKDLVKYAESCMYSPGYRSYR 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02701 676 Pfam Malic enzyme, N-terminal domain 201 381 IPR012301 GO:0004471
Vimu10g02701 676 PIRSF ME 99 676 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 SMART malic_2 201 382 IPR012301 GO:0004471
Vimu10g02701 676 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 392 675 IPR036291 -
Vimu10g02701 676 ProSitePatterns Malic enzymes signature. 388 404 IPR015884 GO:0004471
Vimu10g02701 676 Pfam Malic enzyme, NAD binding domain 392 644 IPR012302 GO:0051287
Vimu10g02701 676 FunFam Malic enzyme 390 676 - -
Vimu10g02701 676 SMART Malic_M_2 392 645 IPR012302 GO:0051287
Vimu10g02701 676 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 116 391 IPR046346 -
Vimu10g02701 676 FunFam Malic enzyme 135 389 - -
Vimu10g02701 676 PRINTS Malic enzyme signature 267 296 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 PRINTS Malic enzyme signature 522 538 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 PRINTS Malic enzyme signature 303 325 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 PRINTS Malic enzyme signature 363 381 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 PRINTS Malic enzyme signature 207 231 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 PRINTS Malic enzyme signature 419 435 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 PRINTS Malic enzyme signature 388 404 IPR001891 GO:0004470|GO:0004471
Vimu10g02701 676 CDD NAD_bind_1_malic_enz 392 670 - -
Vimu10g02701 676 Gene3D - 135 389 IPR037062 GO:0004471
Vimu10g02701 676 PANTHER MALIC ENZYME-RELATED 106 676 - -
Vimu10g02701 676 Gene3D - 390 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02701 Vimu-Chr10 38437818 38442486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02701 K00029 - gmx:100801564 1101.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g02701 10 38437818 38442486 Vimu10g02701 10 38437818 38442486 ECH
Vimu10g02701 10 38437818 38442486 Vimu11g02887 11 48736625 48741947 ECH
Vimu10g02701 10 38437818 38442486 Vimu4g00272 4 1875028 1879842 ECH
Vimu11g04665 11 67081603 67086448 Vimu10g02701 10 38437818 38442486 ECH
Vimu11g02887 11 48736625 48741947 Vimu10g02701 10 38437818 38442486 ECH
Vimu4g00272 4 1875028 1879842 Vimu10g02701 10 38437818 38442486 ECH