Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g02693 ATGTCCAAAGTGCCCCTCTTTATTTCATTTCATTTCTTTCTGTTATTCAGCATCGCTGTACCCTCTCGGGTAATTTCAGAAACTGAACAAACAATTTTACTCACTCTCAAACGTGAACTGGGAGACCCACCGTCGCTCCGATCATGGAAACCGTCGCCTTCTGCGCCGTGCGATTGGACGGAGATTGGATGCAGCGACGGCGGCGCCGTCACGAAGCTAGTCCTCTCCAGCAAAGGCATCACCACCACCAAGAGCCTTCCTTCTACAATCTGCAACCTCAAACACCTACTTGAGCTTAACCTCTTCAACAACTCCATTTCCGGCGAGTTTCCGACAACCTTGTACGAATGCTCCAACCTCCGGTACCTCAACCTTTCGCAGAATTACCTCTTCGGAGCGATCCCCGCCGACGTGGACCGCCTCAAAACCCTCACTTTCCTCGACCTCGGCGCCAACTCCTTCTCCGGAGAGATCCCGGCCGCGATCGGGAACCTGTCGGAACTGCAAACGCTGTATCTTTCCGCAAACAACTTCGAGGGAACCGTCCCCAGGGAAATCGGAAACTTGTTGAACCTCGAATTTTTGGGTTTGGCTTATAATCTCAAACTAGCGCCGTGGGAGTTCCCGTTGGAGTTTAGGAAATTAAGAAATTTGAGGTCTATGTATATGCCGCAGTGTAACTTGATCGGAGAGATTCCAGAATATTTCGGGGATATTTTCACGAACCTCGAACGGTTGGATTTGGGGAAGAACAAGTTATCAGGGAGCATTCCGAGGAATTTGTTCTCGCTGAGGAAGTTGAGGTTCTTGTACCTGTTCAGTAACAGATTGTCGGGTGTGATTCCTAGTGCTACGATGCAGTGTTTGGAATTAATCGACCTTGATTTCGCGAAGAATAATTTGACGGGTTCCATACCCCCAGAATTTGGAAAGTTAAAGAACTTGAGTACCTTGCACTTGTACGAAAATCACTTGGTCGGTGAGATTCCCATAAGTTTAAGCCAAATTCCTAGTCTCATCTATTTCAGGGTTTTCAGCAATAACTTGAGTGGAACACTGCCTCCAGAACTAGGCTTGCATTCCAAGCTTACAGTGTTTGAGGTTTCTGAGAACCAACTCAGTGGTGGGTTGCCGGAACATTTATGTGCAGGTGGTGCCCTTATTGGTGTGGTTGCATTTTCCAACAATTTTAGTGGAGTTTTGCCTGAATGGATTGGGAATTGTCCTTCTCTAGCCACGGTTCAGCTTTATAATAACAAGTTTTCGGGTGAGGTTCCTTTGGGTTTGTGGACTATGAATAACCTTTCGTCCTTGATTTTGAGCAACAACTCTTTTTCTGGGCCTCTTCCGAGTCAAGTGTTTTGGAATATGACGAGGATTGAGATCGCCAACAACAACTTCTCGGGTGGGATATCTGTTGGGATTACTTCAGCCAAAAATCTGATGTATCTTGATGCCAGAAACAACATGCTTTTGGGTGAAATTCCAAGGGAATTGACTCAACTTTCACAGCTTACTGCTCTCATGCTGGATGGTAACCAACTTTCGGGTGCACTTCCATCTGAGATTATTTCGTGGCAATCACTGAACACTTTGACACTATCACAAAACAAAATTTCTGGCCAGATTCCCACGGCTATTACTGCTCTTCCCCGCCTCGCTTACCTGGACTTGTCTCAAAACGACATATCAGGTGAAATACCTCCTCAGTTTGATAGGTTGCGGTTTGTTTTCCTCAACTTGTCCTCCAACCGGCTATCTGGGAAAATTCCTGACGAGTTCAATAACCTCGCATTTGAAAACAGTTTCTTGAGCAATCCTCATCTATGTGCTTACAATCCAAACGTCCACCTTGACAACTGCTTGACCAAAACCGCGTCAGCGGCACCACAGTCGAGCAATTCGTCTTCGAAATCACTGGCCCTGGTTCTGGCTGCCACTGCGGTTGTGTTAGCGGCAATAGCTTCCTTGGTCTTCTATATGTTGAAAACGCAATGGGGCAAAAAGCACTGCGGGCATAAAAATAAGGTTGCAACGTGGAGGCTCACTTCATTCCAGAAGCTTGATCTCACGGAAATAAACTTCCTCTCGAGTTTGACAGACAATAACCTCATAGGGAGTGGAGGGTTTGGGAAAGTTTACCGGATTGCTTCAAATCGGCCAGGTGAGTATGTTGCGGTGAAGCGGATCTGGAATCGCGAGGATGTGGATGACAAGTTGGAGAAAGAGTTCCAGGCTGAGGTTGAGATCCTGGGCAACATTCGACACTCGAATATAGTGAAGCTTTTGTGCTGCTATGCAATCAAGAGCCTTACTGATGCATTCGATGAGAATGTCAAAGAACCACGTTATGCGCAAGAGATGGCTAATGTCTTCAAATTGGGCCTCCTTTGCACAAGCTCCTTGCCCTCAACCAGACCTTCCACGAAGGAGATTTTGCAAGTACTTCGGTGTTGTCATTCAGGTTCTACACGTAGAAAAATGGGAAATGAGTTTGATATCGCTCCTCTACTTGGTGACACA 2523 0.4657 MSKVPLFISFHFFLLFSIAVPSRVISETEQTILLTLKRELGDPPSLRSWKPSPSAPCDWTEIGCSDGGAVTKLVLSSKGITTTKSLPSTICNLKHLLELNLFNNSISGEFPTTLYECSNLRYLNLSQNYLFGAIPADVDRLKTLTFLDLGANSFSGEIPAAIGNLSELQTLYLSANNFEGTVPREIGNLLNLEFLGLAYNLKLAPWEFPLEFRKLRNLRSMYMPQCNLIGEIPEYFGDIFTNLERLDLGKNKLSGSIPRNLFSLRKLRFLYLFSNRLSGVIPSATMQCLELIDLDFAKNNLTGSIPPEFGKLKNLSTLHLYENHLVGEIPISLSQIPSLIYFRVFSNNLSGTLPPELGLHSKLTVFEVSENQLSGGLPEHLCAGGALIGVVAFSNNFSGVLPEWIGNCPSLATVQLYNNKFSGEVPLGLWTMNNLSSLILSNNSFSGPLPSQVFWNMTRIEIANNNFSGGISVGITSAKNLMYLDARNNMLLGEIPRELTQLSQLTALMLDGNQLSGALPSEIISWQSLNTLTLSQNKISGQIPTAITALPRLAYLDLSQNDISGEIPPQFDRLRFVFLNLSSNRLSGKIPDEFNNLAFENSFLSNPHLCAYNPNVHLDNCLTKTASAAPQSSNSSSKSLALVLAATAVVLAAIASLVFYMLKTQWGKKHCGHKNKVATWRLTSFQKLDLTEINFLSSLTDNNLIGSGGFGKVYRIASNRPGEYVAVKRIWNREDVDDKLEKEFQAEVEILGNIRHSNIVKLLCCYAIKSLTDAFDENVKEPRYAQEMANVFKLGLLCTSSLPSTRPSTKEILQVLRCCHSGSTRRKMGNEFDIAPLLGDT 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g02693 841 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 385 625 - -
Vimu10g02693 841 SMART LRR_typ_2 432 456 IPR003591 -
Vimu10g02693 841 SMART LRR_typ_2 502 526 IPR003591 -
Vimu10g02693 841 SMART LRR_typ_2 165 189 IPR003591 -
Vimu10g02693 841 SMART LRR_typ_2 312 336 IPR003591 -
Vimu10g02693 841 SMART LRR_typ_2 93 117 IPR003591 -
Vimu10g02693 841 SMART LRR_typ_2 240 264 IPR003591 -
Vimu10g02693 841 SMART LRR_typ_2 550 573 IPR003591 -
Vimu10g02693 841 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Vimu10g02693 841 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 183 281 - -
Vimu10g02693 841 Pfam Protein kinase domain 701 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02693 841 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 208 768 - -
Vimu10g02693 841 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 283 381 - -
Vimu10g02693 841 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Vimu10g02693 841 FunFam Receptor-like protein kinase HSL1 isoform A 26 180 - -
Vimu10g02693 841 ProSitePatterns Protein kinases ATP-binding region signature. 705 728 IPR017441 GO:0005524
Vimu10g02693 841 Gene3D Phosphorylase Kinase; domain 1 676 774 - -
Vimu10g02693 841 Gene3D Ribonuclease Inhibitor 390 628 IPR032675 -
Vimu10g02693 841 SUPERFAMILY L domain-like 32 376 - -
Vimu10g02693 841 ProSiteProfiles Protein kinase domain profile. 699 841 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu10g02693 841 Pfam Leucine Rich Repeat 119 138 IPR001611 GO:0005515
Vimu10g02693 841 SUPERFAMILY Protein kinase-like (PK-like) 693 769 IPR011009 -
Vimu10g02693 841 Gene3D Ribonuclease Inhibitor 286 385 IPR032675 -
Vimu10g02693 841 SUPERFAMILY L domain-like 393 614 - -
Vimu10g02693 841 Gene3D Ribonuclease Inhibitor 25 182 IPR032675 -
Vimu10g02693 841 Gene3D Ribonuclease Inhibitor 183 285 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g02693 Vimu-Chr10 38372086 38375173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g02693 769 838 Receptor kinase-like Gene Family AT5G25930 47.143 2.36e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vimu10g02693 Pkinase 5.4e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g02693 - - gmx:100782076 1128.24